PUBLICATION
Phylogenetic and structural analysis of the phospholipase A2 gene family in vertebrates
- Authors
- Huang, Q., Wu, Y., Qin, C., He, W., Wei, X.
- ID
- ZDB-PUB-141230-10
- Date
- 2015
- Source
- International journal of molecular medicine 35(3): 587-96 (Journal)
- Registered Authors
- Keywords
- none
- MeSH Terms
-
- Amino Acid Sequence
- Animals
- Computational Biology
- Databases, Genetic
- Evolution, Molecular
- Humans
- Models, Molecular
- Molecular Sequence Data
- Multigene Family*
- Phospholipases A2/chemistry*
- Phospholipases A2/genetics*
- Phylogeny*
- Protein Conformation*
- Selection, Genetic
- Sequence Alignment
- Vertebrates
- PubMed
- 25543670 Full text @ Int. J. Mol. Med.
Citation
Huang, Q., Wu, Y., Qin, C., He, W., Wei, X. (2015) Phylogenetic and structural analysis of the phospholipase A2 gene family in vertebrates. International journal of molecular medicine. 35(3):587-96.
Abstract
The phospholipase A (PLA)2 family is the most complex gene family of phospholipases and plays a crucial role in a number of physiological activities. However, the phylogenetic background of the PLA2 gene family and the amino acid residues of the PLA2G7 gene following positive selection gene remain undetermined. In this study, we downloaded 49 genomic data sets of PLA from different species, including the human, house mouse, Norway rat, pig, dog, chicken, cattle, African clawed frog, Sumatran orangutan and the zebrafish species. Phylogenetic relationships were determined using the neighbor-joining (NJ), minimum evolution (ME) and maximum parsimony (MP) methods, as well as the Bayesian information criterion. The results were then presented as phylogenetic trees. Positive selection sites were detected using site, branch and branch‑site models. These methods led us to the following assumptions: i) closer lineages were observed between PLA2G16 and PLA2G6, PLA2G7 and PLA2G4, PLA2G3 and PLA2G12, as well as among PLA2G10, PLA2G5 and PLA2G15; ii) PLA2G5 appeared to be the origin of the PLA2 family, and PLA2G7 was one of the most evolutionarily distant PLA2 proteins; iii) 16 positive-selection sites were detected and were marked in the PLA2G7 protein sequence as 327D, 257Q, 276G, 34s, 66G, 67C, 319S, 28N, 50S, 54T, 58R, 75T, 88Q, 92R, 179H and 191K.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping