PUBLICATION
miRNAs Expression Profile in Zebrafish Developing Vessels
- Authors
- Ristori, E., Nicoli, S.
- ID
- ZDB-PUB-141204-8
- Date
- 2015
- Source
- Methods in molecular biology (Clifton, N.J.) 1214: 129-50 (Chapter)
- Registered Authors
- Nicoli, Stefania
- Keywords
- none
- MeSH Terms
-
- Zebrafish/embryology*
- Zebrafish/genetics*
- Animals
- DNA, Complementary/biosynthesis
- DNA, Complementary/genetics
- Endothelial Cells/metabolism
- Sequence Analysis, RNA
- High-Throughput Nucleotide Sequencing
- MicroRNAs/genetics*
- Polymerase Chain Reaction
- Gene Expression Profiling/methods*
- Blood Vessels/cytology
- Blood Vessels/embryology*
- Blood Vessels/metabolism*
- Green Fluorescent Proteins/genetics
- PubMed
- 25468601 Full text @ Meth. Mol. Biol.
Citation
Ristori, E., Nicoli, S. (2015) miRNAs Expression Profile in Zebrafish Developing Vessels. Methods in molecular biology (Clifton, N.J.). 1214:129-50.
Abstract
In this chapter we will describe in detail a method to identify the expression profile of miRNAs in developing vessels in zebrafish embryonic development using Illumina deep sequencing strategy. We will describe how to obtain RNA from FACS-sorted primary endothelial cells from growing vessels at early stages of development and how to prepare high-quality small RNA libraries using the TruSeq small RNA strategy for Illumina Hi-Seq machine. This methodology can be applied to discover and profile all forms of small noncoding RNA, including novel miRNA and sequence variants as well as quantification of miRNAs differentially expressed in endothelial cells during angiogenesis.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping