ZFIN ID: ZDB-PUB-140516-20
Extended Kramers-Moyal analysis applied to optical trapping
Honisch, C., Friedrich, R., Hörner, F., and Denz, C.
Date: 2012
Source: Physical review. E, Statistical, nonlinear, and soft matter physics   86(2 Pt 2): 026702 (Review)
Registered Authors: Friedrich, Rainer
Keywords: none
MeSH Terms:
  • Algorithms
  • Markov Chains
  • Models, Statistical
  • Models, Theoretical
  • Monte Carlo Method
  • Normal Distribution
  • Optical Tweezers
  • Physics/methods*
  • Stochastic Processes
  • Time
PubMed: 23005877 Full text @ Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
ABSTRACT

The Kramers-Moyal analysis is a well-established approach to analyze stochastic time series from complex systems. If the sampling interval of a measured time series is too low, systematic errors occur in the analysis results. These errors are labeled as finite time effects in the literature. In the present article, we present some new insights about these effects and discuss the limitations of a previously published method to estimate Kramers-Moyal coefficients at the presence of finite time effects. To increase the reliability of this method and to avoid misinterpretations, we extend it by the computation of error estimates for estimated parameters using a Monte Carlo error propagation technique. Finally, the extended method is applied to a data set of an optical trapping experiment yielding estimations of the forces acting on a Brownian particle trapped by optical tweezers. We find an increased Markov-Einstein time scale of the order of the relaxation time of the process, which can be traced back to memory effects caused by the interaction of the particle and the fluid. Above the Markov-Einstein time scale, the process can be very well described by the classical overdamped Markov model for Brownian motion.

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