PUBLICATION
Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors
- Authors
- Yan, J., and Burgess, S.M.
- ID
- ZDB-PUB-111011-13
- Date
- 2012
- Source
- Methods in molecular biology (Clifton, N.J.) 786: 275-290 (Chapter)
- Registered Authors
- Burgess, Shawn, Yan, Jizhou
- Keywords
- yeast, inverse one-hybrid, DNA binding sites, transcription factor, protein-DNA interaction, genome-wide screening
- MeSH Terms
-
- Binding Sites/genetics
- DNA, Fungal/genetics
- DNA, Fungal/metabolism
- Genome, Fungal/genetics
- Saccharomyces cerevisiae/genetics*
- Transcription Factors/metabolism*
- Two-Hybrid System Techniques*
- PubMed
- 21938633 Full text @ Meth. Mol. Biol.
Citation
Yan, J., and Burgess, S.M. (2012) Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors. Methods in molecular biology (Clifton, N.J.). 786:275-290.
Abstract
Binding of transcription factors to promoters is a necessary step to initiate transcription. From an evolutionary standpoint, the regulatory proteins and their binding sites are considered to have molecularly coevolved. We developed an efficient yeast strategy, an "inverse one-hybrid system", to identify binding targets of transcription factors globally in a genome of interest. The technique consists of a yeast strain expressing a -transcription factor of interest mated to yeast containing a library of random genomic fragments cloned upstream of a reporter gene (URA3). Positive growth on media without uracil denotes a fragment being bound by the transcription factor, e.g., zebrafish FoxI1. The bound fragments in hundreds of positive clones are sequenced and retested for their binding activities using a colony PCR and sequencing strategy. The resulting tools allow for rapid and genomic-wide identification of transcriptional binding targets.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping