PUBLICATION

Control of Dead end localization and activity – Implications for the function of the protein in antagonizing miRNA function

Authors
Slanchev, K., Stebler, J., Goudarzi, M., Cojocaru, V., Weidinger, G., and Raz, E.
ID
ZDB-PUB-081121-17
Date
2009
Source
Mechanisms of Development   126(3-4): 270-277 (Journal)
Registered Authors
Goudarzi, Mehdi, Raz, Erez, Slanchev, Krasimir, Weidinger, Gilbert
Keywords
Dead end, primordial germ cell, zebrafish, miRNA, RRM
MeSH Terms
  • 3' Untranslated Regions/metabolism
  • Amino Acid Sequence
  • Animals
  • Cell Nucleus/metabolism
  • Gene Expression Regulation, Developmental
  • Germ Cells/metabolism
  • MicroRNAs/metabolism*
  • Molecular Sequence Data
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Protein Transport
  • RNA Transport
  • RNA-Binding Proteins/chemistry
  • RNA-Binding Proteins/genetics
  • RNA-Binding Proteins/metabolism*
  • Sequence Deletion
  • Structural Homology, Protein
  • Zebrafish/genetics
  • Zebrafish/metabolism*
  • Zebrafish Proteins/chemistry
  • Zebrafish Proteins/genetics
  • Zebrafish Proteins/metabolism*
PubMed
19013519 Full text @ Mech. Dev.
Abstract
Dead end (dnd) is a vertebrate-specific component of the germ plasm and germ-cell granules that is crucial for germ-cell development in zebrafish and mouse. Dnd counteracts the inhibitory function of miRNAs, thereby facilitating the expression of proteins such as Nanos and Tdrd7 in the germ cells. Here, we show that cis-acting elements within dnd mRNA and the RNA recognition motive (RRM) of the protein are essential for targeting protein expression to the germ cells and to the perinuclear granules, respectively. We demonstrate that as it executes its function, Dnd translocates between the germ-cell nucleus and germ-cell granules. This phenomenon is not observed in proteins mutated in the RRM motif, correlating with loss of function of Dnd. Based on molecular modeling, we identify the putative RNA binding domain of Dnd as a canonical RRM and propose that this domain is important for protein subcellular localization and function.
Genes / Markers
Figures
Figure Gallery
Expression
Phenotype
Mutation and Transgenics
Human Disease / Model Data
Sequence Targeting Reagents
Fish
Antibodies
Orthology
Engineered Foreign Genes
Mapping
Errata and Notes