PUBLICATION
Genome structure and thymic expression of an endogenous retrovirus in zebrafish
- Authors
- Shen, C.H. and Steiner, L.A.
- ID
- ZDB-PUB-040109-28
- Date
- 2004
- Source
- Journal of virology 78(2): 899-911 (Journal)
- Registered Authors
- Steiner, Lisa
- Keywords
- none
- MeSH Terms
-
- Cloning, Molecular
- Viral Proteins/genetics
- Viral Proteins/metabolism
- Gene Library
- Sequence Analysis, DNA
- PubMed
- 14694121 Full text @ J. Virol.
Abstract
In a search for previously unknown genes that are required for lymphocyte development in zebrafish, a retroviral sequence was identified in a subtracted thymus cDNA library and in genomic DNA libraries. The provirus is 11.2 kb and contains intact open reading frames for the gag, pol, and env genes, as well as nearly identical flanking long terminal repeat sequences. As determined by in situ hybridization, the thymus appears to be a major tissue for retroviral expression in both larval and adult fish. Several viral transcripts were found by Northern blotting in the adult thymus. The provirus was found at the same genomic locus in sperm from four fish, suggesting that it is an endogenous retrovirus. Phylogenetic analysis indicates that it is closest to, yet distinct from, the cluster of murine leukemia virus-related retroviruses, suggesting that this virus represents a new group of retroviruses.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping