ZFIN Person: Parichy, David M.

Biography and Research Interest

• evolution and development of pigment pattern in zebrafish and other fishes
• biology of post-embryonic stem cells derived from the neural crest
• dwarfism syndromes and bone development
• developmental genetics of metamorphosis
• behavioral and ecological significance of pigment pattern variation

Publications

Include unpublished citations

Aman, A.J., Parichy, D.M. (2024) Anatomy, development and regeneration of zebrafish elasmoid scales. Developmental Biology. 510:1-7
Aman, A.J., Saunders, L.M., Carr, A.A., Srivatasan, S., Eberhard, C., Carrington, B., Watkins-Chow, D., Pavan, W.J., Trapnell, C., Parichy, D.M. (2023) Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin. eLIFE. 12:
Lalonde, R.L., Kemmler, C.L., Riemslagh, F.W., Aman, A.J., Kresoja-Rakic, J., Moran, H.R., Nieuwenhuize, S., Parichy, D.M., Burger, A., Mosimann, C. (2022) Heterogeneity and genomic loci of ubiquitous transgenic Cre reporter lines in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(10):1754-1773
Aman, A.J., Kim, M., Saunders, L.M., Parichy, D.M. (2021) Thyroid hormone regulates abrupt skin morphogenesis during zebrafish postembryonic development. Developmental Biology. 477:205-218
Eom, D.S., Patterson, L.B., Bostic, R.R., Parichy, D.M. (2021) Immunoglobulin superfamily receptor junctional adhesion molecule 3 (Jam3) requirement for melanophore survival and patterning during formation of zebrafish stripes. Developmental Biology. 476:314-327
Huang, D., Lewis, V.M., Foster, T.N., Toomey, M.B., Corbo, J.C., Parichy, D.M. (2021) Development and genetics of red coloration in the zebrafish relative Danio albolineatus. eLIFE. 10:
McCluskey, B.M., Liang, Y., Lewis, V.M., Patterson, L.B., Parichy, D.M. (2021) Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects. Biology Open. 10(9):
McCluskey, B.M., Uji, S., Mancusi, J.L., Postlethwait, J.H., Parichy, D.M. (2021) A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots. PLoS Genetics. 17:e1009364
Gur, D., Bain, E.J., Johnson, K.R., Aman, A.J., Pasoili, H.A., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Lippincott-Schwartz, J., Parichy, D.M. (2020) In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning. Nature communications. 11:6391
Volkov, L.I., Kim-Han, J.S., Saunders, L.M., Poria, D., Hughes, A.E.O., Kefalov, V.J., Parichy, D.M., Corbo, J.C. (2020) Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision. Proceedings of the National Academy of Sciences of the United States of America. 117(26):15262-15269

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Non-Zebrafish Publications

Voss SR, Smith JJ, Gardiner D, Parichy DM. 2001. Conserved vertebrate chromosome segments in the large salamander genome. Genetics 158:735–746.

Parichy DM. 2001. “Pigment patterns of ectothermic vertebrates: heterochronic vs. non-heterochronic models for pigment pattern evolution.” In: Beyond Heterochrony (M. Zelditch, Ed.). Wiley.

Parichy, D. M. 2000. Homology and evolutionary novelty in the deployment of extracellular matrix molecules during pigment pattern formation in the salamanders Taricha torosa and T. rivularis (Salamandridae). J. Exp. Zool (Mol. Dev. Evol.) 288, in press.

Parichy, D. M. and Johnson, S. L. 1999. Evolutionary genetics of Danio pigment pattern development. Dev. Biol. 210:192.

Parichy, D. M., Rawls, J. F., Pratt, S. J., Whitfield, T. T., and Johnson, S. L. 1999. Zebrafish sparse corresponds to an orthologue of c-kit and is required for the morphogenesis of a subpopulation of melanocytes, but is not required for hematopoiesis or primordial germ cell development. Development 126:3425-3426.

Parichy, D. M., Stigson, M. and Voss, S. R. 1999. Genetic analysis of Steel and the PG-M/versican-encoding gene AxPG as candidate genes for the white (d) pigmentation mutant in the salamander Ambystoma mexicanum. Development, Genes, and Evolution 209:349–356.

Parichy, D. M. 1998. Experimental analysis of character coupling across a complex life cycle: pigment pattern metamorphosis in the tiger salamander, Ambystoma tigrinum tigrinum. Journal of Morphology 237:53–67.

Reedy, M. V., Parichy, D. M., Erickson, C. A., Mason, K. and Frost-Mason, S. K. 1998. “Regulation of melanoblast migration and differentiation,” Chapter 4, in: The Pigmentary System and its Disorders (Nordland, J. J., Boissy, R. E., Hearing, V. J., King, R. A. and Ortonne, J. P., Eds.). Oxford University Press.

Parichy, D. M. 1996. Pigment patterns of larval salamanders (Ambystomatidae, Salamandridae): the role of the lateral line sensory system and the evolution of pattern-forming mechanisms. Developmental Biology 175:265–282.

Parichy, D. M. 1996. When neural crest and placodes collide: interactions between melanophores and the lateral lines that generate stripes in the salamander Ambystoma tigrinum tigrinum (Ambystomatidae). Developmental Biology 175:283–300.

Parichy, D. M. 1996. Salamander pigment patterns: how can they be used to study developmental mechanisms and their evolutionary transformation? International Journal of Developmental Biology 40:871–884.

Parichy, D. M., and Kaplan, R. H. 1995. Maternal investment and developmental plasticity: functional consequences for locomotor performance of hatchling frog larvae. Functional Ecology 9:606–617.

Parichy, D. M., and Kaplan, R. H. 1992. Maternal effects on offspring growth and development depend on environmental quality in the frog, Bombina orientalis. Oecologia 91:579–586.

Parichy, D. M., and Kaplan, R. H. 1992. Developmental consequences of tail injury on the oriental fire-bellied toad, Bombina orientalis. Copeia 1992:129–137.

Parichy, D. M., Shaffer, H. B. and Mangel, M. 1992. Heterochrony as a unifying theme in evolution and development. Evolution 46:1252–1254. (Book review.)