ZFIN Person: Collas, Philippe

ZFIN ID: ZDB-PERS-970418-40

ZFIN ID: ZDB-PERS-970418-40

Collas, Philippe

URL:
Affiliation:
Address:	Department of Biochemistry, Physiology and Nutrition Norwegian College of Veterinary Medicine P.O.Box 8146 Dep. Oslo, N-0033 Norway
Country:
Phone:
Fax:	47 22600985
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

*** no longer involved in zf research ***

PUBLICATIONS

Meier, M., Grant, J., Dowdle, A., Thomas, A., Gerton, J., Collas, P., O'Sullivan, J.M., Horsfield, J.A. (2017) Cohesin facilitates zygotic genome activation in zebrafish. Development (Cambridge, England). 145(1)

Ostrup, O., Reiner, A.H., Aleström, P., Collas, P. (2014) The specific alteration of histone methylation profiles by DZNep during early zebrafish development. Biochimica et biophysica acta. Gene regulatory mechanisms. 1839(11):1307-15

Aanes, H., Collas, P., and Aleström, P. (2014) Transcriptome dynamics and diversity in the early zebrafish embryo. Briefings in Functional Genomics. 13(2):95-105

Aanes, H., Winata, C., Moen, L.F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P. (2014) Normalization of RNA-sequencing data from samples with varying mRNA levels. PLoS One. 9(2):e89158

Aanes, H., Ostrup, O., Andersen, I.S., Moen, L.F., Mathavan, S., Collas, P., and Alestrom, P. (2013) Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish. BMC Genomics. 14(1):331

Andersen, I.S., Lindeman, L.C., Reiner, A.H., Ostrup, O., Aanes, H., Aleström, P., and Collas, P. (2013) Epigenetic marking of the zebrafish developmental program. Current topics in developmental biology. 104:85-112

Andersen, I.S., Reiner, A.H., Aanes, H., Alestrom, P., and Collas, P. (2012) Developmental features of DNA methylation during activation of the embryonic zebrafish genome. Genome biology. 13(7):R65

Andersen, I.S., Ostrup, O., Lindeman, L.C., Aanes, H., Reiner, A.H., Mathavan, S., Aleström, P., and Collas, P. (2012) Epigenetic complexity during the zebrafish mid-blastula transition. Biochemical and Biophysical Research Communications. 417(4):1139-1144

Lindeman, L.C., Andersen, I.S., Reiner, A.H., Li, N., Aanes, H., Ostrup, O., Winata, C., Mathavan, S., Muller, F., Aleström, P., and Collas, P. (2011) Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation. Developmental Cell. 21(6):993-1004

Aanes, H., Winata, C.L., Lin, C.H., Chen, J.P., Srinivasan, K.G., Lee, S.G., Lim, A.Y., Hajan, H.S., Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S. (2011) Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome research. 21(8):1328-38

Lindeman, L.C., Reiner, A.H., Mathavan, S., Aleström, P., and Collas, P. (2010) Tiling histone h3 lysine 4 and 27 methylation in zebrafish using high-density microarrays. PLoS One. 5(12):e15651

Lindeman, L.C., Winata, C.L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P. (2010) Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos. The International journal of developmental biology. 54(5):803-813

Lindeman, L.C., Vogt-Kielland, L.T., Aleström, P., and Collas, P. (2009) Fish'n ChIPs: Chromatin Immunoprecipitation in the Zebrafish Embryo. Methods in molecular biology (Clifton, N.J.). 567:75-86

Torgersen, J., Collas, P., and Aleström, P. (2000) Gene-Gun-Mediated Transfer of Reporter Genes to Somatic Zebrafish (Danio rerio) Tissues. Marine biotechnology (New York, N.Y.). 2(3):293-300

Liang, M.-R., Aleström, P., and Collas, P. (2000) Glowing zebrafish: integration, transmission, and expression of a single luciferase transgene promoted by noncovalent DNA-nuclear transport peptide complexes. Molecular reproduction and development. 55(1):8-13

Collas, P., Liang, M.R., Vincent, M., and Aleström, P. (1999) Active transgenes in zebrafish are enriched in acetylated histone H4 and dynamically associate with RNA Pol II and splicing complexes. Journal of Cell Science. 112:1045-1054

Collas, P. (1999) Sequential PKC- and Cdc2-mediated phosphorylation events elicit zebrafish nuclear envelope disassembly. Journal of Cell Science. 112:977-987

Collas, P. (1998) Modulation of plasmid DNA methylation and expression in zebrafish embryos. Nucleic acids research. 26:4454-4461

Collas, P. and Aleström, P. (1998) Nuclear localization signals enhance germline transmission of a transgene in zebrafish. Transgenic Research. 7(4):303-309

Collas, P. and Aleström, P. (1998) Gene transfer into zebrafish embryo nuclei mediated by nuclear localization signals. In New Developments in Marine Biotechnology. :11-14

Aleström, P, Husebye H., and Collas, P. (1998) Efficiency of gene transfer and promoter specificity assayed by transient gene expression in zebrafish. In Gene Transfer in Aquatic Organisms, de la Fuente & Castro, eds., Springer Verlag. :75-82

Husebye, H., Collas, P., and Aleström, P. (1997) A functional study of the salmon GnRH promoter. Molecular marine biology and biotechnology. 6:357-363

Collas, P. and Aleström, P. (1997) Rapid targeting of plasmid DNA to zebrafish embryo nuclei by the nuclear localization signal of SV40 T antigen. Molecular marine biology and biotechnology. 6(1):48-58

Collas, P., Husebye, H., and Aleström. P. (1997) Transferring foreign genes into zebrafish eggs by microinjection. In Transgenic Animals - Generation and Use, Part II, Section D, L.M. Houdebine, ed., Harwood Academic Publ.. :119-122

Collas, P. and Aleström, P. (1997) Nuclear localization signals: a driving force for nuclear transport of plasmid DNA in zebrafish. Biochemistry and cell biology = Biochimie et biologie cellulaire. 75:633-640

Collas, P. and Aleström, P. (1997) Enhanced germline transmission of transgene with nuclear localizing signals. Molecular and cellular biology. (Suppl.) 8:233a

Collas, P., Husebye, H., and Aleström, P. (1996) The nuclear localization sequence of the SV40 T antigen promotes transgene uptake and expression in zebrafish embryo nuclei. Transgenic Research. 5(6):451-458

Collas, P., Sörensen, A., and Aleström, P. (1996) Fluorescence in situ hybridization analysis of NLS-mediated transgene uptake by zebrafish embryo nuclei. Molecular biology of the cell. (Suppl.) 12:334

NON-ZEBRAFISH PUBLICATIONS
Collas, P. and Aleström, P. 1996. The nuclear localization signal of SV40 T antigen directs import of plasmid DNA into Sea urchin male pronuclei in vitro. Mol Reprod Dev 45:431-438.

Husebye, H, Collas, P., and Aleström, P. 1997. A functional study of the salmon GnRH promoter . Mol Mar Biol Biotech 6, 357-363.