ZFIN ID: ZDB-PERS-970220-2
Casane, Didier
Email: didier.casane@legs.cnrs-gif.fr
URL: http://www.legs.cnrs-gif.fr/perso.php?id=casane
Affiliation: Molecular and Functionnal Evolution of Multigenic Families
Address: Evolution, Génomes et Spéciation CNRS, UPR9034 Batiment 13 1 avenue de la terrasse Gif-sur-Yvette, 91198 France
Country: France
Phone: 33 (0)1 69 82 37 59
Fax: 33 (0)1 69 07 37 01
ORCID ID:


BIOGRAPHY AND RESEARCH INTERESTS


PUBLICATIONS
Hinaux, H., Blin, M., Fumey, J., Legendre, L., Heuzé, A., Casane, D., Rétaux, S. (2015) Lens defects in Astyanax mexicanus cavefish: evolution of crystallins and a role for alphaA-crystallin. Developmental Neurobiology. 75(5):505-21
Debiais-Thibaud, M., Metcalfek, C.J., Pollack, J., Germon, I., Ekker, M., Depew, M., Laurenti, P., Borday-Birraux, V., and Casane, D. (2013) Heterogeneous conservation of dlx paralog co-expression in jawed vertebrates. PLoS One. 8(6):e68182
Compagnucci, C., Debiais, M., Coolen, M., Fish, J., Griffin, J.N., Bertocchini, F., Minoux, M., Rijli, F.M., Borday-Birraux, V., Casane, D., Mazan, S., and Depew, M.J. (2013) Pattern and polarity in the development and evolution of the gnathostome jaw: Both conservation and heterotopy in the branchial arches of the shark, Scyliorhinus canicula. Developmental Biology. 377(2):428-48
Hinaux, H., Poulain, J., Da Silva, C., Noirot, C., Jeffery, W.R., Casane, D., and Retaux, S. (2013) De Novo Sequencing of Astyanax mexicanus Surface Fish and Pachon Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes. PLoS One. 8(1):e53553
Oulion, S., Laurenti, P., and Casane, D. (2012) Hox genes organization: studying non-model vertebrates leads to a paradigm shift. Med. Sci.. 28(4):350-353
Kano, S., Xiao, J.H., Osorio, J., Ekker, M., Hadzhiev, Y., Muller, F., Casane, D., Magdelenat, G., and Retaux, S. (2010) Two lamprey hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome hedgehogs. PLoS One. 5(10):e13332
Debiais-Thibaud, M., Germon, I., Laurenti, P., Casane, D., and Borday-Birraux, V. (2008) Low divergence in Dlx gene expression between dentitions of the medaka (Oryzias latipes) versus high level of expression shuffling in osteichtyans. Evolution & development. 10(4):464-476
Debiais-Thibaud, M., Borday-Birraux, V., Germon, I., Bourrat, F., Metcalfe, C.J., Casane, D., and Laurenti, P. (2007) Development of oral and pharyngeal teeth in the medaka (Oryzias latipes): comparison of morphology and expression of eve1 gene. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308(6):693-708
Avaron, F., Thäron-Antono, C., Beck, C.W., Borday-Birraux, V., Géraudie, J., Casane, D., and Laurenti, P. (2003) Comparison of even-skipped related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences. Evolution & development. 5(2):145-156
Borday, V., Thaëron, C., Avaron, F., Brulfert, A., Casane, D., Laurenti, P., and Géraudie, J. (2001) evx1 transcription in bony fin rays segment boundaries leads to a reiterated pattern during zebrafish fin development and regeneration. Developmental Dynamics : an official publication of the American Association of Anatomists. 220(2):91-98
Thaëron, C., Avaron, F., Casane, D., Borday, V., Thisse, B., Thisse, C., Boulekbache, H., and Laurenti, P. (2000) Zebrafish evx1 is dynamically expressed during embryogenesis in subsets of interneurones, posterior gut and urogenital system. Mechanisms of Development. 99(1-2):167-172

NON-ZEBRAFISH PUBLICATIONS
Castellanos-Gell J., Robainas-Barcia A., Casane D., Chevalier-Monteagudo P., Pina-Amargós F. and García-Machado E. (2012) The surgeonfish, Acanthurus bahianus, has crossed the Amazon – Orinoco outflow barrier. Marine Biology 159(7): 1561-1565

Griffiths A.M., Jacoby D.M.P., Casane D., McHugh M., Genner M.J. and Sims D.W. (2012) First analysis of multiple paternity in an oviparous shark species, the small-spotted catshark (Scyliorhinus canicula L.). Journal of Heredity 103(2): 166-173

Debiais-Thibaud M., Oulion S., Bourrat F., Laurenti P., Casane D., Borday-Birraux V. (2011) The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula. BMC Evolutionary Biology 11(1): 307

Griffiths A.M., Casane D., McHugh M., Wearmouth V.J., Sims D.W. and Genner M.J. (2011) Characterisation of polymorphic microsatellite loci in the small-spotted catshark (Scyliorhinus canicula L.). Conservation Genetics Resources 3(4): 705-709

García-Machado E., Hernández D., García-Debrás A., Chevalier-Monteagudo P., Metcalfe C., Bernatchez L. and Casane D. (2011) Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: Evidence for cryptic allopatric diversity. Molecular Phylogenetics and Evolution 61(2): 470-483

Oulion S., Borday-Birraux V., Debiais-Thibaud M., Mazan S., Laurenti P. and Casane D. (2011) Evolution of repeated structures along the body axis of jawed vertebrates, insights from the Scyliorhinus canicula Hox code. Evolution and Development 13(3): 247-259

Oulion S., Debiais-Thibaud M., d’Aubenton-Carafa Y., Thermes C., Da Silva C., Bernard-Samain S., Gavory F., Wincker P., Mazan S. and Casane D. (2010) Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome. Molecular Biology and Evolution 27(12): 2829-2838

Lara A., Ponce de León J.L., Rodríguez R., Casane D., Côté G., Bernatchez L. and García-Machado E. (2010) DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts. Molecular Ecology resources 10(3): 421-430

Moreno P., Alvarez M., Lopez L., Moratorio G., Casane D., Castells M., Castro S., Cristina J. and Colina R. (2009) Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient. Virology Journal 6:203

Bon C., Caudy N., de Dieuleveult M., Fosse P., Philippe M., Maksud F., Beraud-Colomb E., Bouzaid E., Kefi R., Laugier C., Rousseau B., Casane D., van der Plicht J. and Elalouf J.M. (2008) Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet. Proceedings of the National Academy of Science USA 105(45): 17447-17452

Jaszczyszyn Y., Haeussler M., Heuzé A., Debiais-Thibaud M., Casane D., Bourrat F., and Joly JS. (2007) Comparison of the expression of medaka (Oryzias latipes) pitx genes with other vertebrates show high conservation and a case of functional shuffling in the pituitary. Gene 406(1-2): 42-50

Da Lage J.L., Danchin E.G. and Casane D. (2007) Where do animal alpha-amylases come from? An interkingdom trip. FEBS Letters 581(21): 3927-3935

Moreno M.P., Casane D., López L. and Cristina J. (2006) Evidence of recombination in quasispecies populations of an Hepatitis C Virus patient undergoing anti-viral therapy. Virology Journal 3(1): 87

Deyts C., Casane D., Vernier P., Bourrat F., Joly J.S. (2006) Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs. European Journal of Neuroscience 24(8): 2299-2308

Snell E.A., Brooke N.M., Taylor W.R., Casane D., Philippe H. and Holland P.W. (2006) An unusual choanoflagellate protein released by Hedgehog autocatalytic processing. Proceedings of the Royal Society of London, Series B 273: 401-407

Philippe H., Snell E.A., Bapteste E., Lopez P., Holland P.W. and Casane D. (2004) Phylogenomics of eukaryotes: the impact of missing data on large alignments. Molecular Biology and Evolution 21(9): 1740-1752

Colina R., Casane D., Vasquez S., García-Aguirre L., Chunga A., Romero H., Khan B. and Cristina J. (2004) Evidence of intratypic recombination in natural populations of hepatitis C virus. Journal of general virology 85: 31-37

Gribaldo S., Casane D., Lopez P. and Philippe H. (2003) Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin. Molecular Biology and Evolution 20(11): 1754-1759

Philippe H., Casane D., Gribaldo S., Lopez P. and Meunier J. (2003) Heterotachy and functional shift in protein evolution. IUBMB Life 55(4-5): 257-265

Costa-Mattioli M., Ferré V., Casane D., Perez-Bercoff R., Coste-Burel M., Imbert-Marcille B.M., Andre E.C., Bressollette-Bodin C., Billaudel S. and Cristina J. (2003) Evidence of recombination in natural populations of hepatitis A virus. Virology 311(1): 51-59

Casane D. and Gueride M. (2002) Evolution of mitochondrial tandem repeats heteroplasmy in cultured rabbit cells. Current Genetics 42(1): 66-72

Lopez P., Casane D. and Philippe H. (2002) Heterotachy, an important process of protein evolution. Molecular Biology and Evolution 19(1): 1-7

Costa-Mattioli M., Cristina J., Romero H., Perez-Bercof R., Casane D., Colina R., Garcia L., Vega I., Glikman G., Romanosky V., Nicand E., Gassin M., Billaudel S. and Ferre V. (2002) Molecular evolution of hepatitis A virus: a new classification based on the complete VP1 protein. Journal of virology 76(18): 9516-9525

Delgado S., Casane D., Bonnaud L., Laurin M., Sire J.-Y. and Girondot M. (2001) Molecular evidence for Precambrian origin of amelogenin, the major protein of Vertebrate enamel. Molecular Biology and Evolution 18(12): 2146-2153

Dufour C., Casane D., Denton D., Wickings J., Corvol P. and Jeunemaitre X. (2000) Human-Chimpanzee DNA sequence variation in the four major genes of the renin angiotensin system. Genomics 69: 14-26

Casane D., Boissinot S., Chang B.H.-J., Shimmin L. and Li W.H. (1997) Mutation Pattern Variation among regions of the primate genome. Journal of Molecular Evolution 45: 216-226

Casane D., Dennebouy N., De Rochambeau H., Mounolou J.-C. and Monnerot M. (1997) Non-neutral evolution of tandem repeats in the mitochondrial DNA control region of logomorphs. Molecular Biology and Evolution 14(8): 779-789

Hardy C., Callou C., Vigne J.-D., Casane D., Dennebouy N., Mounolou J.-C. and Monnerot M. (1995) Rabbit mitochondrial DNA diversity from prehistoric to modern times. Journal of Molecular Evolution 40: 227-237

Monnerot M., Vigne J.-D., Biju-Duval C., Casane D., Callou C., Hardy C., Mougel F., Soriguer R., Dennebouy N. and Mounolou J.-C. (1994) Rabbit and Man: Genetic and Historic approach. Genetics Selection and Evolution 26(1): 167-182

Casane D., Dennebouy N., De Rochambeau H., Mounolou J.-C. and Monnerot M. (1994) Genetic analysis of systematic mitochondrial heteroplasmy in rabbits. Genetics 138: 471-480

Monnerot M., Casane D., Hardy C. and Vigne J.-D. (1994) Evolution of Oryctolagus: relationships within the Lagomorpha system and access to populations with ancient DNA. Polish Ecological Studies 20(3-4): 543-551

Hardy C., Casane D., Vigne J.-D., Callou C., Dennebouy N., Mounolou J.-C. and Monnerot M. (1994) Ancient DNA from Bronze Age bones of European rabbit (Oryctolagus cuniculus). Experientia 50: 254-270

Hardy C., Vigne J.-D., Casane D., Dennebouy N., Mounolou J.-C. and Monnerot M. (1994) Origin of European rabbit (Oryctolagus cuniculus) in a Mediterranean Island: Zooarchaeology and ancient DNA examination. Journal of Evolutionary Biology 7: 217-226
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