ZFIN ID: ZDB-PERS-960805-674
Stainier, Didier
Email: didier.stainier@mpi-bn.mpg.de
URL: http://www.mpi-hlr.de/index.php?id=18&L=1
Affiliation: Stainier Lab
Address: Max Planck Institute for Heart and Lung Research Dept. III - Developmental Genetics Ludwigstrasse 43 61231 Bad Nauheim
Country: United States
Phone: +49 (0)6032 705-1302
Fax: +49 (0)6032 705-1304
Orcid ID:


BIOGRAPHY AND RESEARCH INTERESTS


PUBLICATIONS
El-Brolosy, M.A., Stainier, D.Y.R. (2017) Genetic compensation: A phenomenon in search of mechanisms. PLoS Genetics. 13:e1006780
Garcia, J., Bagwell, J., Njaine, B., Norman, J., Levic, D.S., Wopat, S., Miller, S.E., Liu, X., Locasale, J.W., Stainier, D.Y.R., Bagnat, M. (2017) Sheath Cell Invasion and Trans-differentiation Repair Mechanical Damage Caused by Loss of Caveolae in the Zebrafish Notochord. Current biology : CB. 27(13):1982-1989.e3
Gut, P., Reischauer, S., Stainier, D.Y.R., Arnaout, R. (2017) Little Fish, Big Data: Zebrafish as a Model for Cardiovascular and Metabolic Disease. Physiological reviews. 97:889-938
Stainier, D.Y., Lai, S.B., Marín-Juez, R., Moura, P.L., Kuenne, C., Lai, J.K.H., Tsedeke, A.T., Guenther, S., Looso, M. (2017) Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration. eLIFE. 6
Gerri, C., Marín-Juez, R., Marass, M., Marks, A., Maischein, H.M., Stainier, D.Y.R. (2017) Hif-1α regulates macrophage-endothelial interactions during blood vessel development in zebrafish. Nature communications. 8:15492
Rasouli, S.J., Stainier, D.Y.R. (2017) Regulation of cardiomyocyte behavior in zebrafish trabeculation by Neuregulin 2a signaling. Nature communications. 8:15281
Chetty, S.C., Rost, M.S., Enriquez, J.R., Schumacher, J.A., Baltrunaite, K., Rossi, A., Stainier, D.Y., Sumanas, S. (2017) Vegf Signaling Promotes Vascular Endothelial Differentiation by Modulating etv2 Expression. Developmental Biology. 424(2):147-161
Lai, J.K., Stainier, D.Y. (2017) Pushing Yap into the Nucleus with Shear Force. Developmental Cell. 40:517-518
Fukuda, R., Gunawan, F., Beisaw, A., Jimenez-Amilburu, V., Maischein, H.M., Kostin, S., Kawakami, K., Stainier, D.Y. (2017) Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature communications. 8:14495
Witzel, H.R., Cheedipudi, S., Gao, R., Stainier, D.Y., Dobreva, G.D. (2017) Isl2b regulates anterior second heart field development in zebrafish. Scientific Reports. 7:41043
Reade, A., Motta-Mena, L.B., Gardner, K.H., Stainier, D.Y., Weiner, O.D., Woo, S. (2017) TAEL: A zebrafish-optimized optogenetic gene expression system with fine spatial and temporal control. Development (Cambridge, England). 144(2):345-355
Bostaille, N., Gauquier, A., Stainier, D.Y., Raible, D.W., Vanhollebeke, B. (2017) Defective adgra2 (gpr124) splicing and function in zebrafish ouchless mutants. Development (Cambridge, England). 144(1):8-11
Jiménez-Amilburu, V., Rasouli, S.J., Staudt, D.W., Nakajima, H., Chiba, A., Mochizuki, N., Stainier, D.Y. (2016) In Vivo Visualization of Cardiomyocyte Apicobasal Polarity Reveals Epithelial to Mesenchymal-like Transition during Cardiac Trabeculation. Cell Reports. 17:2687-2699
Matsuoka, R.L., Marass, M., Avdesh, A., Helker, C.S., Maischein, H.M., Grosse, A.S., Kaur, H., Lawson, N.D., Herzog, W., Stainier, D.Y. (2016) Radial glia regulate vascular patterning around the developing spinal cord. eLIFE. 5
Rossi, A., Gauvrit, S., Marass, M., Pan, L., Moens, C.B., Stainier, D.Y. (2016) Regulation of Vegf signaling by natural and synthetic ligands. Blood. 128(19):2359-2366
Mokalled, M.H., Patra, C., Dickson, A.L., Endo, T., Stainier, D.Y., Poss, K.D. (2016) Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish. Science (New York, N.Y.). 354:630-634
Marín-Juez, R., Marass, M., Gauvrit, S., Rossi, A., Lai, S.L., Materna, S.C., Black, B.L., Stainier, D.Y. (2016) Fast revascularization of the injured area is essential to support zebrafish heart regeneration. Proceedings of the National Academy of Sciences of the United States of America. 113(40):11237-11242
Cox, A.G., Hwang, K.L., Brown, K.K., Evason, K.J., Beltz, S., Tsomides, A., O'Connor, K., Galli, G.G., Yimlamai, D., Chhangawala, S., Yuan, M., Lien, E.C., Wucherpfennig, J., Nissim, S., Minami, A., Cohen, D.E., Camargo, F.D., Asara, J.M., Houvras, Y., Stainier, D.Y., Goessling, W. (2016) Yap reprograms glutamine metabolism to increase nucleotide biosynthesis and enable liver growth. Nature Cell Biology. 18(8):886-96
Reischauer, S., Stone, O.A., Villasenor, A., Chi, N., Jin, S.W., Martin, M., Lee, M.T., Fukuda, N., Marass, M., Witty, A., Fiddes, I., Kuo, T., Chung, W.S., Salek, S., Lerrigo, R., Alsiö, J., Luo, S., Tworus, D., Augustine, S.M., Mucenieks, S., Nystedt, B., Giraldez, A.J., Schroth, G.P., Andersson, O., Stainier, D.Y. (2016) Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification. Nature. 535:294-8
Cherian, A.V., Fukuda, R., Augustine, S.M., Maischein, H.M., Stainier, D.Y. (2016) N-cadherin relocalization during cardiac trabeculation. Proceedings of the National Academy of Sciences of the United States of America. 113(27):7569-74
Housley, M.P., Njaine, B., Ricciardi, F., Stone, O.A., Hölper, S., Krüger, M., Kostin, S., Stainier, D.Y. (2016) Cavin4b/Murcb Is Required for Skeletal Muscle Development and Function in Zebrafish. PLoS Genetics. 12:e1006099
Kwon, H.B., Wang, S., Helker, C.S., Rasouli, S.J., Maischein, H.M., Offermanns, S., Herzog, W., Stainier, D.Y. (2016) In vivo modulation of endothelial polarization by Apelin receptor signalling. Nature communications. 7:11805
Orr, N., Arnaout, R., Gula, L.J., Spears, D.A., Leong-Sit, P., Li, Q., Tarhuni, W., Reischauer, S., Chauhan, V.S., Borkovich, M., Uppal, S., Adler, A., Coughlin, S.R., Stainier, D.Y., Gollob, M.H. (2016) A mutation in the atrial-specific myosin light chain gene (MYL4) causes familial atrial fibrillation. Nature communications. 7:11303
Ahuja, S., Dogra, D., Stainier, D.Y., Reischauer, S. (2016) Id4 functions downstream of Bmp signaling to restrict TCF function in endocardial cells during atrioventricular valve development. Developmental Biology. 412(1):71-82
Koenig, A.L., Baltrunaite, K., Bower, N.I., Rossi, A., Stainier, D.Y., Hogan, B.M., Sumanas, S. (2016) Vegfa signaling promotes zebrafish intestinal vasculature development through endothelial cell migration from the posterior cardinal vein. Developmental Biology. 411(1):115-27
Collins, M.M., Stainier, D.Y. (2016) Organ Function as a Modulator of Organ Formation: Lessons from Zebrafish. Current topics in developmental biology. 117:417-433
Goessling, W., Stainier, D.Y. (2016) Endoderm specification and liver development. Methods in cell biology. 134:463-83
Samsa, L.A., Givens, C., Tzima, E., Stainier, D.Y., Qian, L., Liu, J. (2015) Cardiac contraction activates endocardial Notch signaling to modulate chamber maturation in zebrafish. Development (Cambridge, England). 142:4080-91
Rossi, A., Kontarakis, Z., Gerri, C., Nolte, H., Hölper, S., Krüger, M., Stainier, D.Y. (2015) Genetic compensation induced by deleterious mutations but not gene knockdowns. Nature. 524(7564):230-3
Evason, K.J., Francisco, M.T., Juric, V., Balakrishnan, S., Lopez Pazmino, M.D., Gordan, J.D., Kakar, S., Spitsbergen, J., Goga, A., Stainier, D.Y. (2015) Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish. PLoS Genetics. 11:e1005305
Palencia-Desai, S., Rost, M.S., Schumacher, J.A., Ton, Q.V., Craig, M.P., Baltrunaite, K., Koenig, A.L., Wang, J., Poss, K.D., Chi, N.C., Stainier, D.Y., Sumanas, S. (2015) Myocardium and BMP signaling are required for endocardial differentiation. Development (Cambridge, England). 142(13):2304-15
Vanhollebeke, B., Stone, O.A., Bostaille, N., Cho, C., Zhou, Y., Maquet, E., Gauquier, A., Cabochette, P., Fukuhara, S., Mochizuki, N., Nathans, J., Stainier, D.Y. (2015) Tip cell-specific requirement for an atypical Gpr124- and Reck-dependent Wnt/β-catenin pathway during brain angiogenesis. eLIFE. 4
Kametani, Y., Chi, N.C., Stainier, D.Y., Takada, S. (2015) Notch signaling regulates venous arterialization during zebrafish fin regeneration. Genes to cells : devoted to molecular & cellular mechanisms. 20(5):427-38
Ye, L., Robertson, M.A., Hesselson, D., Stainier, D.Y., Anderson, R.M. (2015) glucagon is essential for alpha cell transdifferentiation and beta cell neogenesis. Development (Cambridge, England). 142:1407-17
Nolte, H., Hölper, S., Housley, M.P., Islam, S., Piller, T., Konzer, A., Stainier, D.Y., Braun, T., Krüger, M. (2015) Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Proteomics. 15(4):739-51
Stainier, D.Y., Kontarakis, Z., Rossi, A. (2015) Making sense of anti-sense data. Developmental Cell. 32:7-8
Gut, P., Stainier, D.Y. (2015) Whole-Organism Screening for Modulators of Fasting Metabolism Using Transgenic Zebrafish. Methods in molecular biology (Clifton, N.J.). 1263:157-165
Arnaout, R., Reischauer, S., Stainier, D.Y. (2014) Recovery of Adult Zebrafish Hearts for High-throughput Applications. Journal of visualized experiments : JoVE. (94)
Sawamiphak, S., Kontarakis, Z., Stainier, D.Y. (2014) Interferon Gamma Signaling Positively Regulates Hematopoietic Stem Cell Emergence. Developmental Cell. 31:640-653
Reischauer, S., Arnaout, R., Ramadass, R., Stainier, D. (2014) Actin Binding GFP Allows 4D In Vivo Imaging of Myofilament Dynamics in the Zebrafish Heart and the Identification of Erbb2 Signaling as a Remodeling Factor of Myofibril Architecture. Circulation research. 115(10):845-56
Kalogirou, S., Malissovas, N., Moro, E., Argenton, F., Stainier, D.Y., Beis, D. (2014) Intracardiac Flow Dynamics Regulate Atrioventricular Valve Morphogenesis. Cardiovascular research. 104(1):49-60
Housley, M.P., Reischauer, S., Dieu, M., Raes, M., Stainier, D.Y., Vanhollebeke, B. (2014) Translational profiling through biotinylation of tagged ribosomes in zebrafish. Development (Cambridge, England). 141(20):3988-93
Tsuji, N., Ninov, N., Delawary, M., Osman, S., Roh, A.S., Gut, P., Stainier, D.Y. (2014) Whole Organism High Content Screening Identifies Stimulators of Pancreatic Beta-Cell Proliferation. PLoS One. 9:e104112
Schulte-Merker, S., Stainier, D.Y. (2014) Out with the old, in with the new: reassessing morpholino knockdowns in light of genome editing technology. Development (Cambridge, England). 141:3103-4
Choi, T.Y., Ninov, N., Stainier, D.Y., and Shin, D. (2014) Extensive Conversion of Hepatic Biliary Epithelial Cells to Hepatocytes after Near Total Loss of Hepatocytes in Zebrafish. Gastroenterology. 146(3):776-88
Markmiller, S., Cloonan, N., Lardelli, R.M., Doggett, K., Keightley, M.C., Boglev, Y., Trotter, A.J., Ng, A.Y., Wilkins, S.J., Verkade, H., Ober, E.A., Field, H.A., Grimmond, S.M., Lieschke, G.J., Stainier, D.Y., and Heath, J.K. (2014) Minor class splicing shapes the zebrafish transcriptome during development. Proc. Natl. Acad. Sci. USA. 111(8):3062-3067
Staudt, D.W., Liu, J., Thorn, K.S., Stuurman, N., Liebling, M., and Stainier, D.Y. (2014) High-resolution imaging of cardiomyocyte behavior reveals two distinct steps in ventricular trabeculation. Development (Cambridge, England). 141(3):585-593
Ishikawa, H., Ide, T., Yagi, T., Jiang, X., Hirono, M., Sasaki, H., Yanagisawa, H., Wemmer, K.A., Stainier, D.Y., Qin, H., Kamiya, R., Marshall, W.F. (2014) TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. eLIFE. 3:e01566
Nussbaum, J.M., Liu, L.J., Hasan, S.A., Schaub, M., McClendon, A., Stainier, D.Y., and Sakaguchi, T.F. (2013) Homeostatic generation of reactive oxygen species protects the zebrafish liver from steatosis. Hepatology (Baltimore, Md.). 58(4):1326-1338
Wythe, J.D., Dang, L.T., Devine, W.P., Boudreau, E., Artap, S.T., He, D., Schachterle, W., Stainier, D.Y., Oettgen, P., Black, B.L., Bruneau, B.G., and Fish, J.E. (2013) ETS Factors Regulate Vegf-Dependent Arterial Specification. Developmental Cell. 26(1):45-58
Ninov, N., Hesselson, D., Gut, P., Zhou, A., Fidelin, K., and Stainier, D.Y. (2013) Metabolic Regulation of Cellular Plasticity in the Pancreas. Current biology : CB. 23(13):1242-50
Hochgreb-Hägele, T., Yin, C., Koo, D.E., Bronner, M.E., and Stainier, D.Y. (2013) Laminin beta1a controls distinct steps during the establishment of digestive organ laterality. Development (Cambridge, England). 140(13):2734-2745
Lancman, J.J., Zvenigorodsky, N., Gates, K.P., Zhang, D., Solomon, K., Humphrey, R.K., Kuo, T., Setiawan, L., Verkade, H., Chi, Y.I., Jhala, U.S., Wright, C.V., Stainier, D.Y., and Dong, P.D. (2013) Specification of hepatopancreas progenitors in zebrafish by hnf1ba and wnt2bb. Development (Cambridge, England). 140(13):2669-2679
Ghajar, C.M., Peinado, H., Mori, H., Matei, I.R., Evason, K.J., Brazier, H., Almeida, D., Koller, A., Hajjar, K.A., Stainier, D.Y., Chen, E.I., Lyden, D., and Bissell, M.J. (2013) The perivascular niche regulates breast tumour dormancy. Nat. Cell Biol.. 15(7):807-817
Zhang, R., Han, P., Yang, H., Ouyang, K., Lee, D., Lin, Y.F., Ocorr, K., Kang, G., Chen, J., Stainier, D.Y., Yelon, D., and Chi, N.C. (2013) In vivo cardiac reprogramming contributes to zebrafish heart regeneration. Nature. 498(7455):497-501
Gut, P., Baeza-Raja, B., Andersson, O., Hasenkamp, L., Hsiao, J., Hesselson, D., Akassoglou, K., Verdin, E., Hirschey, M.D., and Stainier, D.Y. (2013) Whole-organism screening for gluconeogenesis identifies activators of fasting metabolism. Nature Chemical Biology. 9(2):97-104
Mugoni, V., Postel, R., Catanzaro, V., De Luca, E., Turco, E., Digilio, G., Silengo, L., Murphy, M.P., Medana, C., Stainier, D.Y., Bakkers, J., and Santoro, M.M. (2013) Ubiad1 Is an Antioxidant Enzyme that Regulates eNOS Activity by CoQ10 Synthesis. Cell. 152(3):504-518
Anderson, R.M., Delous, M., Bosch, J.A., Ye, L., Robertson, M.A., Hesselson, D., and Stainier, D.Y. (2013) Hepatocyte Growth Factor Signaling in Intrapancreatic Ductal Cells Drives Pancreatic Morphogenesis. PLoS Genetics. 9(7):e1003650
Boglev, Y., Badrock, A.P., Trotter, A.J., Du, Q., Richardson, E.J., Parslow, A.C., Markmiller, S.J., Hall, N.E., de Jong-Curtain, T.A., Ng, A.Y., Verkade, H., Ober, E.A., Field, H.A., Shin, D., Shin, C.H., Hannan, K.M., Hannan, R.D., Pearson, R.B., Kim, S.H., Ess, K.C., Lieschke, G.J., Stainier, D.Y., and Heath, J.K. (2013) Autophagy induction is a tor- and tp53-independent cell survival response in a zebrafish model of disrupted ribosome biogenesis. PLoS Genetics. 9(2):e1002379
Mellman, K., Huisken, J., Dinsmore, C., Hoppe, C., and Stainier, D.Y. (2012) Fibrillin-2b regulates endocardial morphogenesis in zebrafish. Developmental Biology. 372(1):111-119
Hassel, D., Cheng, P., White, M.P., Ivey, K.N., Kroll, J., Augustin, H.G., Katus, H.A., Stainier, D.Y., and Srivastava, D. (2012) MicroRNA-10 Regulates the Angiogenic Behavior of Zebrafish and Human Endothelial Cells by Promoting Vascular Endothelial Growth Factor Signaling. Circulation research. 111(11):1421-1433
Yin, C., Evason, K.J., Maher, J.J., and Stainier, D.Y. (2012) The bHLH transcription factor Hand2 marks hepatic stellate cells in zebrafish: Analysis of stellate cell entry into the developing liver. Hepatology (Baltimore, Md.). 56(5):1958-1970
Herbert, S.P., Cheung, J.Y., and Stainier, D.Y. (2012) Determination of Endothelial Stalk versus Tip Cell Potential during Angiogenesis by H2.0-like Homeobox-1. Current biology : CB. 22(19):1789-1794
Ni, T.T., Lu, J., Zhu, M., Maddison, L.A., Boyd, K.L., Huskey, L., Ju, B., Hesselson, D., Zhong, T.P., Page-McCaw, P.S., Stainier, D.Y., and Chen, W. (2012) Conditional control of gene function by an invertible gene trap in zebrafish. Proc. Natl. Acad. Sci. USA. 109(38):15389-15394
Woo, S., Housley, M.P., Weiner, O.D., and Stainier, D.Y. (2012) Nodal signaling regulates endodermal cell motility and actin dynamics via Rac1 and Prex1. The Journal of cell biology. 198(5):941-952
Andersson, O., Adams, B.A., Yoo, D., Ellis, G.C., Gut, P., Anderson, R.M., German, M.S., and Stainier, D.Y. (2012) Adenosine Signaling Promotes Regeneration of Pancreatic beta Cells In Vivo. Cell Metabolism. 15(6):885-894
Ninov, N., Borius, M., and Stainier, D.Y. (2012) Different levels of Notch signaling regulate quiescence, renewal and differentiation in pancreatic endocrine progenitors. Development (Cambridge, England). 139(9):1557-1567
Liu, J., and Stainier, D.Y. (2012) Zebrafish in the study of early cardiac development. Circulation research. 110(6):870-874
Kirchmaier, B.C., Poon, K.L., Schwerte, T., Huisken, J., Winkler, C., Jungblut, B., Stainier, D.Y., and Brand, T. (2012) The Popeye domain containing 2 (popdc2) gene in zebrafish is required for heart and skeletal muscle development. Developmental Biology. 363(2):438-450
Schaub, M., Nussbaum, J., Verkade, H., Ober, E.A., Stainier, D.Y., and Sakaguchi, T.F. (2012) Mutation of zebrafish Snapc4 is associated with loss of the intrahepatic biliary network. Developmental Biology. 363(1):128-137
Balczerski, B., Matsutani, M., Castillo, P., Osborne, N., Stainier, D.Y., and Crump, J.G. (2012) Analysis of Sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors. Developmental Biology. 361(2):230-241
Hugo, S.E., Cruz-Garcia, L., Karanth, S., Anderson, R.M., Stainier, D.Y., and Schlegel, A. (2012) A monocarboxylate transporter required for hepatocyte secretion of ketone bodies during fasting. Genes and Development. 26(3):282-93
Staudt, D., and Stainier, D. (2012) Uncovering the Molecular and Cellular Mechanisms of Heart Development Using the Zebrafish. Annual review of genetics. 46:397-418
Shin, D., Weidinger, G., Moon, R.T., and Stainier, D.Y. (2012) Intrinsic and extrinsic modifiers of the regulative capacity of the developing liver. Mechanisms of Development. 128(11-12):525-535
Cheung, I.D., Bagnat, M., Ma, T.P., Datta, A., Evason, K., Moore, J.C., Lawson, N.D., Mostov, K.E., Moens, C.B., and Stainier, D.Y. (2012) Regulation of intrahepatic biliary duct morphogenesis by Claudin 15-like b. Developmental Biology. 361(1):68-78
Delous, M., Yin, C., Shin, D., Ninov, N., Debrito Carten, J., Pan, L., Ma, T.P., Farber, S.A., Moens, C.B., and Stainier, D.Y. (2012) sox9b Is a Key Regulator of Pancreaticobiliary Ductal System Development. PLoS Genetics. 8(6):e1002754
Hesselson, D., Anderson, R.M., and Stainier, D.Y. (2011) Suppression of Ptf1a activity induces acinar-to-endocrine conversion. Current biology : CB. 21(8):712-717
Delgado-Olguin, P., Brand-Arzamendi, K., Scott, I.C., Jungblut, B., Stainier, D.Y., Bruneau, B.G., and Recillas-Targa, F. (2011) CTCF Promotes Muscle Differentiation by Modulating the Activity of Myogenic Regulatory Factors. The Journal of biological chemistry. 286(14):12483-94
Fish, J.E., Wythe, J.D., Xiao, T., Bruneau, B.G., Stainier, D.Y., Srivastava, D., and Woo, S. (2011) A Slit/miR-218/Robo regulatory loop is required during heart tube formation in zebrafish. Development (Cambridge, England). 138(7):1409-1419
Shin, D., Lee, Y., Poss, K.D., and Stainier, D.Y. (2011) Restriction of hepatic competence by Fgf signaling. Development (Cambridge, England). 138(7):1339-1348
Takeuchi, J.K., Lou, X., Alexander, J.M., Sugizaki, H., Delgado-Olguín, P., Holloway, A.K., Mori, A.D., Wylie, J.N., Munson, C., Zhu, Y., Zhou, Y.Q., Yeh, R.F., Henkelman, R.M., Harvey, R.P., Metzger, D., Chambon, P., Stainier, D.Y., Pollard, K.S., Scott, I.C., and Bruneau, B.G. (2011) Chromatin remodelling complex dosage modulates transcription factor function in heart development. Nature communications. 2:187
Tittle, R.K., Sze, R., Ng, A., Nuckels, R.J., Swartz, M.E., Anderson, R.M., Bosch, J., Stainier, D.Y., Eberhart, J.K., and Gross, J.M. (2011) Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens. Developmental Biology. 350(1):50-63
Jurczyk, A., Roy, N., Bajwa, R., Gut, P., Lipson, K., Yang, C., Covassin, L., Racki, W.J., Rossini, A.A., Phillips, N., Stainier, D.Y., Greiner, D.L., Brehm, M.A., Bortell, R., and diIorio, P. (2011) Dynamic glucoregulation and mammalian-like responses to metabolic and developmental disruption in zebrafish. Gen. Comp. Endocrinol.. 170(2):334-345
Kalousova, A., Mavropoulos, A., Adams, B.A., Nekrep, N., Li, Z., Krauss, S., Stainier, D.Y., and German, M.S. (2010) Dachshund homologues play a conserved role in islet cell development. Developmental Biology. 348(2):143-152
Arrenberg, A.B., Stainier, D.Y., Baier, H., and Huisken, J. (2010) Optogenetic control of cardiac function. Science (New York, N.Y.). 330(6006):971-974
Liu, J., Bressan, M., Hassel, D., Huisken, J., Staudt, D., Kikuchi, K., Poss, K.D., Mikawa, T., and Stainier, D.Y. (2010) A dual role for ErbB2 signaling in cardiac trabeculation. Development (Cambridge, England). 137(22):3867-3875
Bagnat, M., Navis, A., Herbstreith, S., Brand-Arzamendi, K., Curado, S., Gabriel, S., Mostov, K., Huisken, J., and Stainier, D.Y. (2010) Cse1l Is a Negative Regulator of CFTR-Dependent Fluid Secretion. Current biology : CB. 20(20):1840-1845
Chi, N.C., Bussen, M., Brand-Arzamendi, K., Ding, C., Olgin, J.E., Shaw, R.M., Martin, G.R., and Stainier, D.Y. (2010) Cardiac conduction is required to preserve cardiac chamber morphology. Proc. Natl. Acad. Sci. USA. 107(33):14662-14667
Curado, S., and Stainier, D.Y. (2010) deLiver'in Regeneration: Injury Response and Development. Seminars in liver disease. 30(3):288-295
Wilson, C.W., and Stainier, D.Y. (2010) Vertebrate Hedgehog signaling: cilia rule. BMC Biology. 8:102
Curado, S., Ober, E.A., Walsh, S., Cortes-Hernandez, P., Verkade, H., Koehler, C.M., and Stainier, D.Y. (2010) The mitochondrial import gene tomm22 is specifically required for hepatocyte survival and provides a liver regeneration model. Disease models & mechanisms. 3(7-8):486-495
Liu, J., and Stainier, D.Y. (2010) Tbx5 and Bmp Signaling Are Essential for Proepicardium Specification in Zebrafish. Circulation research. 106(12):1818-1828
Yin, C., Kikuchi, K., Hochgreb, T., Poss, K.D., and Stainier, D.Y. (2010) Hand2 Regulates Extracellular Matrix Remodeling Essential for Gut-Looping Morphogenesis in Zebrafish. Developmental Cell. 18(6):973-984
Kikuchi, K., Holdway, J.E., Werdich, A.A., Anderson, R.M., Fang, Y., Egnaczyk, G.F., Evans, T., MacRae, C.A., Stainier, D.Y., and Poss, K.D. (2010) Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes. Nature. 464(7288):601-605
Bertrand, J.Y., Chi, N.C., Santoso, B., Teng, S., Stainier, D.Y., and Traver, D. (2010) Haematopoietic stem cells derive directly from aortic endothelium during development. Nature. 464(7285):108-111
Chung, W.S., Andersson, O., Row, R., Kimelman, D., and Stainier, D.Y. (2010) Suppression of Alk8-mediated Bmp signaling cell-autonomously induces pancreatic β-cells in zebrafish. Proc. Natl. Acad. Sci. USA. 107(3):1142-1147
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Lee, C.Y., Vogeli, K.M., Kim, S.H., Chong, S.W., Jiang, Y.J., Stainier, D.Y., and Jin, S.W. (2009) Notch Signaling Functions as a Cell-Fate Switch between the Endothelial and Hematopoietic Lineages. Current biology : CB. 19(19):1616-1622
Herbert, S.P., Huisken, J., Kim, T.N., Feldman, M.E., Houseman, B.T., Wang, R.A., Shokat, K.M., and Stainier, D.Y. (2009) Arterial-venous segregation by selective cell sprouting: an alternative mode of blood vessel formation. Science (New York, N.Y.). 326(5950):294-298
Anderson, R.M., Bosch, J.A., Goll, M.G., Hesselson, D., Dong, P.D., Shin, D., Chi, N.C., Shin, C.H., Schlegel, A., Halpern, M., and Stainier, D.Y. (2009) Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Developmental Biology. 334(1):213-223
Hesselson, D., Anderson, R.M., Beinat, M., and Stainier, D.Y. (2009) Distinct populations of quiescent and proliferative pancreatic β-cells identified by HOTcre mediated labeling. Proc. Natl. Acad. Sci. USA. 106(35):14896-14901
Santoro, M.M., Pesce, G., and Stainier, D.Y. (2009) Characterization of vascular mural cells during zebrafish development. Mechanisms of Development. 126(8-9):638-649
Kawahara, A., and Stainier, D.Y. (2009) Noncanonical Activity of Seryl-Transfer RNA Synthetase and Vascular Development. Trends in cardiovascular medicine. 19(6):179-182
Goll, M.G., Anderson, R., Stainier, D.Y., Spradling, A.C., and Halpern, M.E. (2009) Transcriptional Silencing and Reactivation in Transgenic Zebrafish. Genetics. 182(3):747-755
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Herzog, W., Müller, K., Huisken, J., and Stainier, D.Y. (2009) Genetic Evidence for a Noncanonical Function of Seryl-tRNA Synthetase in Vascular Development. Circulation research. 104(11):1260-1266
de Jong-Curtain, T.A., Parslow, A.C., Trotter, A.J., Hall, N.E., Verkade, H., Tabone, T., Christie, E.L., Crowhurst, M.O., Layton, J.E., Shepherd, I.T., Nixon, S.J., Parton, R.G., Zon, L.I., Stainier, D.Y., Lieschke, G.J., and Heath, J.K. (2009) Abnormal nuclear pore formation triggers apoptosis in the intestinal epithelium of elys-deficient zebrafish. Gastroenterology. 136(3):902-911
De Val, S., Chi, N.C., Meadows, S.M., Minovitsky, S., Anderson, J.P., Harris, I.S., Ehlers, M.L., Agarwal, P., Visel, A., Xu, S.M., Pennacchio, L.A., Dubchak, I., Krieg, P.A., Stainier, D.Y., and Black, B.L. (2008) Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors. Cell. 135(6):1053-1064
Osborne, N., Brand-Arzamendi, K., Ober, E.A., Jin, S.W., Verkade, H., Holtzman, N.G., Yelon, D., and Stainier, D.Y. (2008) The spinster homolog, two of hearts, is required for sphingosine 1-phosphate signaling in zebrafish. Current biology : CB. 18(23):1882-1888
Munson, C., Huisken, J., Bit-Avragim, N., Kuo, T., Dong, P.D., Ober, E.A., Verkade, H., Abdelilah-Seyfried, S., and Stainier, D.Y. (2008) Regulation of neurocoel morphogenesis by Pard6gammab. Developmental Biology. 324(1):41-54
Morton, S.U., Scherz, P.J., Cordes, K.R., Ivey, K.N., Stainier, D.Y., and Srivastava, D. (2008) microRNA-138 modulates cardiac patterning during embryonic development. Proc. Natl. Acad. Sci. USA. 105(46):17830-17835
Chung, W.S., Shin, C.H., and Stainier, D.Y. (2008) Bmp2 signaling regulates the hepatic versus pancreatic fate decision. Developmental Cell. 15(5):738-748
Sakaguchi, T.F., Sadler, K.C., Crosnier, C., and Stainier, D.Y. (2008) Endothelial Signals Modulate Hepatocyte Apicobasal Polarization in Zebrafish. Current biology : CB. 18(20):1565-1571
Fish, J.E., Santoro, M.M., Morton, S.U., Yu, S., Yeh, R.F., Wythe, J.D., Ivey, K.N., Bruneau, B.G., Stainier, D.Y., and Srivastava, D. (2008) miR-126 regulates angiogenic signaling and vascular integrity. Developmental Cell. 15(2):272-284
Bit-Avragim, N., Hellwig, N., Rudolph, F., Munson, C., Stainier, D.Y., and Abdelilah-Seyfried, S. (2008) Divergent polarization mechanisms during vertebrate epithelial development mediated by the Crumbs complex protein Nagie oko. Journal of Cell Science. 121(Pt 15):2503-2510
Dong, P.D., Provost, E., Leach, S.D., and Stainier, D.Y. (2008) Graded levels of Ptf1a differentially regulate endocrine and exocrine fates in the developing pancreas. Genes and Development. 22(11):1445-1450
Shin, C.H., Chung, W.S., Hong, S.K., Ober, E.A., Verkade, H., Field, H.A., Huisken, J., and Stainier, D.Y. (2008) Multiple roles for Med12 in vertebrate endoderm development. Developmental Biology. 317(2):467-479
Chi, N.C., Shaw, R.M., Jungblut, B., Huisken, J., Ferrer, T., Arnaout, R., Scott, I., Beis, D., Xiao, T., Baier, H., Jan, L.Y., Tristani-Firouzi, M., and Stainier, D.Y. (2008) Genetic and Physiologic Dissection of the Vertebrate Cardiac Conduction System. PLoS Biology. 6(5):e109
Chung, W.S., and Stainier, D.Y. (2008) Intra-endodermal interactions are required for pancreatic beta cell induction. Developmental Cell. 14(4):582-593
Chi, N.C., Shaw, R.M., De Val, S., Kang, G., Jan, L.Y., Black, B.L., and Stainier, D.Y. (2008) Foxn4 directly regulates tbx2b expression and atrioventricular canal formation. Genes and Development. 22(6):734-739
Scherz, P.J., Huisken, J., Sahai-Hernandez, P., and Stainier, D.Y. (2008) High-speed imaging of developing heart valves reveals interplay of morphogenesis and function. Development (Cambridge, England). 135(6):1179-1187
Curado, S., Stainier, D.Y., and Anderson, R.M. (2008) Nitroreductase-mediated cell/tissue ablation in zebrafish: a spatially and temporally controlled ablation method with applications in developmental and regeneration studies. Nature Protocols. 3(6):948-954
Santoro, M.M., Samuel, T., Mitchell, T., Reed, J.C., and Stainier, D.Y. (2007) Birc2 (cIap1) regulates endothelial cell integrity and blood vessel homeostasis. Nature Genetics. 39(11):1397-1402
Schlegel, A., and Stainier, D.Y. (2007) Lessons from "Lower" Organisms: What Worms, Flies, and Zebrafish Can Teach Us about Human Energy Metabolism. PLoS Genetics. 3(11):e199
Huisken, J., and Stainier, D.Y. (2007) Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM). Optics letters. 32(17):2608-2610
Bagnat, M., Cheung, I.D., Mostov, K.E., and Stainier, D.Y. (2007) Genetic control of single lumen formation in the zebrafish gut. Nat. Cell Biol.. 9(8):954-960
Arnaout, R., Ferrer, T., Huisken, J., Spitzer, K., Stainier, D.Y., Tristani-Firouzi, M., and Chi, N.C. (2007) Zebrafish model for human long QT syndrome. Proc. Natl. Acad. Sci. USA. 104(27):11316-11321
Jin, S.W., Herzog, W., Santoro, M.M., Mitchell, T.S., Frantsve, J., Jungblut, B., Beis, D., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Field, H.A., Chi, N.C., Wehman, A.M., Baier, H., and Stainier, D.Y. (2007) A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology. 307(1):29-42
Shin, D., Shin, C.H., Tucker, J., Ober, E.A., Rentzsch, F., Poss, K.D., Hammerschmidt, M., Mullins, M.C., and Stainier, D.Y. (2007) Bmp and Fgf signaling are essential for liver specification in zebrafish. Development (Cambridge, England). 134(11):2041-2050
Curado, S., Anderson, R.M., Jungblut, B., Mumm, J., Schroeter, E., and Stainier, D.Y. (2007) Conditional targeted cell ablation in zebrafish: A new tool for regeneration studies. Developmental dynamics : an official publication of the American Association of Anatomists. 236(4):1025-1035
Scott, I.C., Masri, B., D'Amico, L.A., Jin, S.W., Jungblut, B., Wehman, A.M., Baier, H., Audigier, Y., and Stainier, D.Y. (2007) The G protein-coupled receptor agtrl1b regulates early development of myocardial progenitors. Developmental Cell. 12(3):403-413
Dong, P.D., Munson, C.A., Norton, W., Crosnier, C., Pan, X., Gong, Z., Neumann, C.J., and Stainier, D.Y. (2007) Fgf10 regulates hepatopancreatic ductal system patterning and differentiation. Nature Genetics. 39(3):397-402
D'Amico, L., Scott, I.C., Jungblut, B., and Stainier, D.Y. (2007) A Mutation in Zebrafish hmgcr1b Reveals a Role for Isoprenoids in Vertebrate Heart-Tube Formation. Current biology : CB. 17(3):252-259
Schlegel, A., and Stainier, D.Y. (2006) Microsomal Triglyceride Transfer Protein Is Required for Yolk Lipid Utilization and Absorption of Dietary Lipids in Zebrafish Larvae. Biochemistry. 45(51):15179-15187
Curado, S., and Stainier, D.Y. (2006) The HeArt of Regeneration. Cell. 127(3):462-464
Sakaguchi, T., Kikuchi, Y., Kuroiwa, A., Takeda, H., and Stainier, D.Y. (2006) The yolk syncytial layer regulates myocardial migration by influencing extracellular matrix assembly in zebrafish. Development (Cambridge, England). 133(20):4063-4072
Vogeli, K.M., Jin, S.W., Martin, G.R., and Stainier, D.Y. (2006) A common progenitor for haematopoietic and endothelial lineages in the zebrafish gastrula. Nature. 443(7109):337-339
Ober, E.A., Verkade, H., Field, H.A., and Stainier, D.Y. (2006) Mesodermal Wnt2b signalling positively regulates liver specification. Nature. 442(7103):688-691
Beis, D., and Stainier, D.Y. (2006) In vivo cell biology: following the zebrafish trend. Trends in cell biology. 16(2):105-112
Jin, S.W., Beis, D., Mitchell, T., Chen, J.N., Stainier, D.Y. (2005) Cellular and molecular analyses of vascular tube and lumen formation in zebrafish. Development (Cambridge, England). 132(23):5199-5209
Corbit, K.C., Aanstad, P., Singla, V., Norman, A.R., Stainier, D.Y., and Reiter, J.F. (2005) Vertebrate Smoothened functions at the primary cilium. Nature. 437(7061):1018-1021
Ng, A.N., de Jong-Curtain, T.A., Mawdsley, D.J., White, S.J., Shin, J., Appel, B., Dong, P.D., Stainier, D.Y., and Heath, J.K. (2005) Formation of the digestive system in zebrafish: III. Intestinal epithelium morphogenesis. Developmental Biology. 286(1):114-135
Beis, D., Bartman, T., Jin, S.W., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Frantsve, J., Field, H.A., Wehman, A., Baier, H., Tallafuss, A., Bally-Cuif, L., Chen, J.N., Stainier, D.Y., and Jungblut, B. (2005) Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development (Cambridge, England). 132(18):4193-4204
Bree, R.T., McLoughlin, S., Jin, S.W., McMeel, O.M., Stainier, D.Y., Grealy, M., and Byrnes, L. (2005) nanor, a novel zygotic gene, is expressed initially at the midblastula transition in zebrafish. Biochemical and Biophysical Research Communications. 333(3):722-728
Qian, F., Zhen, F., Ong, C., Jin, S.W., Meng Soo, H., Stainier, D.Y., Lin, S., Peng, J., and Wen, Z. (2005) Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes. Developmental dynamics : an official publication of the American Association of Anatomists. 233(3):1163-1172
Stainier, D.Y. (2005) No organ left behind: tales of gut development and evolution. Science (New York, N.Y.). 307(5717):1902-1904
Trinh, L.A., Yelon, D., and Stainier, D.Y. (2005) Hand2 regulates epithelial formation during myocardial diferentiation. Current biology : CB. 15(5):441-446
Bartman, T., Walsh, E.C., Wen, K.K., McKane, M., Ren, J., Alexander, J., Rubenstein, P.A., and Stainier, D.Y. (2004) Early myocardial function affects endocardial cushion development in zebrafish. PLoS Biology. 2(5):E129
Parker, L.H., Schmidt, M., Jin, S.W., Gray, A.M., Beis, D., Pham, T., Frantz, G., Palmieri, S., Hillan, K., Stainier, D.Y., De Sauvage, F.J., Ye, W. (2004) The endothelial-cell-derived secreted factor Egfl7 regulates vascular tube formation. Nature. 425(6984):754-758
Kikuchi, Y., Verkade, H., Reiter, J.F., Kim, C.H., Chitnis, A.B., Kuroiwa, A., and Stainier, D.Y. (2004) Notch signaling can regulate endoderm formation in zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists. 229(4):756-762
Trinh, L.A., and Stainier, D.Y. (2004) Fibronectin Regulates Epithelial Organization during Myocardial Migration in Zebrafish. Developmental Cell. 6(3):371-382
Trinh, L.A., and Stainier, D.Y. (2004) Cardiac development. The Zebrafish: Cellular and Developmental Biology,2nd Ed. Methods Cell Biol.. 76:455-473
Ober, E.A., Olofsson, B., Makinen, T., Jin, S.W., Shoji, W., Koh, G.Y., Alitalo, K., and Stainier, D.Y. (2004) Vegfc is required for vascular development and endoderm morphogenesis in zebrafish. EMBO reports. 5(1):78-84
Reim, G., Mizoguchi, T., Stainier, D.Y., Kikuchi, Y., and Brand, M. (2004) The POU domain protein spg (pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova. Developmental Cell. 6(1):91-101
Berdougo, E., Coleman, H., Lee, D.H., Stainier, D.Y., and Yelon, D. (2003) Mutation of weak atrium/atrial myosin heavy chain disrupts atrial function and influences ventricular morphogenesis in zebrafish. Development (Cambridge, England). 130(24):6121-6129
Horne-Badovinac, S., Rebagliati, M., and Stainier, D.Y. (2003) A cellular framework for gut-looping morphogenesis in zebrafish. Science (New York, N.Y.). 302(5645):662-665
Trinh, L.A., Meyer, D., and Stainier, D.Y. (2003) The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish. Development (Cambridge, England). 130(20):4989-4998
Field, H.A., Dong, P.D., Beis, D., and Stainier, D.Y. (2003) Formation of the digestive system in zebrafish. II. Pancreas morphogenesis. Developmental Biology. 261(1):197-208
Tidyman, W.E., Sehnert, A.J., Huq, A., Agard, J., Deegan, F., Stainier, D.Y., and Ordahl, C.P. (2003) In vivo regulation of the chicken cardiac troponin T gene promoter in zebrafish embryos. Developmental dynamics : an official publication of the American Association of Anatomists. 227(4):484-496
Miller, C.T., Yelon, D., Stainier, D.Y., and Kimmel, C.B. (2003) Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development (Cambridge, England). 130(7):1353-1365
Field, H.A., Ober, E.A., Roeser, T., and Stainier, D.Y. (2003) Formation of the digestive system in zebrafish. I. Liver morphogenesis. Developmental Biology. 253(2):279-290
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Scott, I.C. and Stainier, D.Y. (2002) Fishing out a new heart. Science (New York, N.Y.). 298(5601):2141-2142
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Skromne, I., Kikuchi, Y., Stainier, D., and Ho, R.K. (2002) The para-hox gene caudal is required for tail formation in zebrafish. Developmental Biology. 247(2):472-473
Sehnert, A.J., Huq, A., Weinstein, B.M., Walker, C., Fishman, M., and Stainier, D.Y. (2002) Cardiac troponin T is essential in sarcomere assembly and cardiac contractility. Nature Genetics. 31(1):106-110
Stainier, D.Y.R. (2002) A glimpse into the molecular entrails of endoderm formation. Genes and Development. 16(8):893-907
Keegan, B.R., Feldman, J.L., Lee, D.H., Koos, D.S., Ho, R.K., Stainier, D.Y., and Yelon, D. (2002) The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development (Cambridge, England). 129(7):1623-1632
Stainier, D.Y., Beis, D., Jungblut, B., and Bartman, T. (2002) Endocardial cushion formation in zebrafish. Cold Spring Harbor symposia on quantitative biology. 67:49-56
Warga, R.M. and Stainier, D.Y.R. (2002) The guts of endoderm formation. Results Probl. Cell Diff.. 40:28-47
Horne-Badovinac, S., Lin, D., Waldron, S., Schwarz, M, Mbamalu, G., Pawson, T., Jan, Y.-N., Stainier, D.Y.R., and Abdelilah-Seyfried, S. (2001) Positional cloning of heart and soul reveals multiple roles for PKCl in zebrafish organogenesis. Current biology : CB. 11(19):1492-1502
Walsh, E.C. and Stainier, D.Y. (2001) UDP-glucose dehydrogenase required for cardiac valve formation in zebrafish. Science (New York, N.Y.). 293(5535):1670-1673
Reiter, J.F., Verkade, H., and Stainier, D.Y.R. (2001) Bmp2b and Oep promote early myocardial differentiation through their regulation of gata5. Developmental Biology. 234(2):330-338
Kikuchi, Y., Agathon, A., Alexander, J., Thisse, C., Waldron, S., Yelon, D., Thisse, B., and Stainier, D.Y. (2001) casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish. Genes and Development. 15(12):1493-1505
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Ehnert, A.J., Huq, A., Tidyman, W., and Stainier, D.Y.R. (2000) A cis-acting element critical for cardiac troponin T expression is revealed by the silent heart mutation in zebrafish. Circulation. 102(18):1144
Liao, W., Ho, C.Y., Yan, Y.L., Postlethwait, J., and Stainier, D.Y.R. (2000) Hhex and Scl function in parallel to regulate early endothelial and blood differentiation in zebrafish. Development (Cambridge, England). 127(20):4303-4313
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Kupperman, E., An, S., Osborne, N., Waldron, S., and Stainier, D.Y. (2000) A sphingosine-1-phosphate receptor regulates cell migration during vertebrate heart development. Nature. 406(6792):192-195
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Griffin, K.J., Stoller, J., Gibson, M., Chen, S., Yelon, D., Stainier, D.Y., and Kimelman, D. (2000) A conserved role for H15-related T-Box transcription factors in zebrafish and Drosophila heart formation. Developmental Biology. 218(2):235-247
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