ZFIN Person: Shimoda, Nobuyoshi

ZFIN ID: ZDB-PERS-960805-657

Shimoda, Nobuyoshi

Email:	shimoda@nils.go.jp
URL:
Affiliation:
Address:	Section of Tissue Engineering Department of Regenerative Medicine National Institute for Longevity Sciences 36-3 Gengo, Morioka-cho, Ohbu Aichi, 474-8511 Japan
Country:
Phone:	+81(Japan)-562-46-8629
Fax:	+81(Japan)-562-46-8629
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Shirai, M., Takayama, K., Takahashi, H., Hirose, Y., Fujii, M., Awazu, A., Shimoda, N., Kikuchi, Y. (2022) Methylome data derived from maternal-zygotic DNA methyltransferase 3aa^-/- zebrafish. Data in brief. 44:108514

Shimoda, N., Hirose, K., Kaneto, R., Izawa, T., Yokoi, H., Hashimoto, N., Kikuchi, Y. (2014) No Evidence for AID/MBD4-Coupled DNA Demethylation in Zebrafish Embryos. PLoS One. 9:e114816

Takayama, K., Shimoda, N., Takanaga, S., Hozumi, S., and Kikuchi, Y. (2014) Expression patterns of dnmt3aa, dnmt3ab, and dnmt4 during development and fin regeneration in zebrafish. Gene expression patterns : GEP. 14(2):105-110

Shimoda, N., Izawa, T., Yoshizawa, A., Yokoi, H., Kikuchi, Y., and Hashimoto, N. (2014) Decrease in cytosine methylation at CpG island shores and increase in DNA fragmentation during zebrafish aging. Age (Dordrecht, Netherlands). 36(1):103-15

Hirose, K., Shimoda, N., and Kikuchi, Y. (2013) Transient reduction of 5-methylcytosine and 5-hydroxymethylcytosine is associated with active DNA demethylation during regeneration of zebrafish fin. Epigenetics. 8(9):899-906

Hirose, K., Shimoda, N., and Kikuchi, Y. (2011) Expression patterns of lgr4 and lgr6 during zebrafish development. Gene expression patterns : GEP. 11(7):378-83

Shimoda, N., Yamakoshi, K., Miyake, A., and Takeda, H. (2005) Identification of a gene required for de novo DNA methylation of the zebrafish no tail gene. Developmental Dynamics : an official publication of the American Association of Anatomists. 233(4):1509-1516

Yamakoshi, K., Shishido, Y., and Shimoda, N. (2005) Generation of Aberrant Transcripts of and Free DNA Ends in Zebrafish no tail Gene. Marine biotechnology (New York, N.Y.). 7(3):163-172

Yamakoshi, K., and Shimoda, N. (2003) De novo DNA methylation at the CpG island of the zebrafish no tail gene. Genesis (New York, N.Y. : 2000). 37(4):195-202

Yamakoshi, K. and Shimoda, N. (2003) PCR-based cloning of an intronless zebrafish no tail gene. Biochemical and Biophysical Research Communications. 306(2):598-602

Shimoda, N. (2000) [Zebrafish gene mapping].. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 45(Suppl. 17):2838-2843

Kawakami, K., Amsterdam, A., Shimoda, N., Becker, T., Mugg, J., Shima, A., and Hopkins, N. (2000) Proviral insertions in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies. Current biology : CB. 10(8):463-466

Shimoda, N., Knapik, E.W., Ziniti, J., Sim, C., Yamada, E., Kaplan, S., Jackson, D., de Sauvage, F., Jacob, H., and Fishman, M.C. (1999) Zebrafish genetic map with 2000 microsatellite markers. Genomics. 58(3):219-232

Izsvák, Z., Ivics, Z., Shimoda, N., Mohn, D., Okamoto, H., and Hackett, P.B. (1999) Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification. Journal of molecular evolution. 48:13-21

Knapik, E.W., Goodman, A., Ekker, M., Chevrette, M., Delgado, J., Neuhauss, S., Shimoda, N., Driever, W., Fishman, M.C., and Jacob, H.J. (1998) A microsatellite genetic linkage map for zebrafish (Danio rerio). Nature Genetics. 18:338-343

Shimoda, N., Chevrette, M., Ekker, M., Kikuchi, Y., Hotta, Y., and Okamoto, H. (1996) Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping. Biochemical and Biophysical Research Communications. 220:233-237

NON-ZEBRAFISH PUBLICATIONS