ZFIN ID: ZDB-PERS-130116-4
Keller, Philipp
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Country: United States
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BIOGRAPHY AND RESEARCH INTERESTS


PUBLICATIONS
Azizi, A., Herrmann, A., Wan, Y., Buse, S.J., Keller, P.J., Goldstein, R.E., Harris, W.A. (2020) Nuclear crowding and nonlinear diffusion during interkinetic nuclear migration in the zebrafish retina. eLIFE. 9:
Sato, Y., Hilbert, L., Oda, H., Wan, Y., Heddleston, J.M., Chew, T.L., Zaburdaev, V., Keller, P., Lionnet, T., Vastenhouw, N., Kimura, H. (2019) Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis. Development (Cambridge, England). 146(19):
Wan, Y., Wei, Z., Looger, L.L., Koyama, M., Druckmann, S., Keller, P.J. (2019) Single-Cell Reconstruction of Emerging Population Activity in an Entire Developing Circuit. Cell. 179(2):355-372.e23
Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J., Ahrens, M.B. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15:1117-1125
Royer, L.A., Lemon, W.C., Chhetri, R.K., Keller, P.J. (2018) A practical guide to adaptive light-sheet microscopy. Nature Protocols. 13(11):2462-2500
Royer, L.A., Lemon, W.C., Chhetri, R.K., Wan, Y., Coleman, M., Myers, E.W., Keller, P.J. (2016) Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. Nature Biotechnology. 34(12):1267-1278
Paksa, A., Bandemer, J., Hoeckendorf, B., Razin, N., Tarbashevich, K., Minina, S., Meyen, D., Biundo, A., Leidel, S.A., Peyrieras, N., Gov, N.S., Keller, P.J., Raz, E. (2016) Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis. Nature communications. 7:11288
Stegmaier, J., Amat, F., Lemon, W.C., McDole, K., Wan, Y., Teodoro, G., Mikut, R., Keller, P.J. (2016) Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos. Developmental Cell. 36:225-240
Beerman, R.W., Matty, M.A., Au, G.G., Looger, L.L., Choudhury, K.R., Keller, P.J., Tobin, D.M. (2015) Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux. Cell Reports. 13(10):2107-17
Chhetri, R.K., Amat, F., Wan, Y., Höckendorf, B., Lemon, W.C., Keller, P.J. (2015) Whole-animal functional and developmental imaging with isotropic spatial resolution. Nature Methods. 12(12):1171-8
Ingold, E., Vom Berg-Maurer, C.M., Burckhardt, C.J., Lehnherr, A., Rieder, P., Keller, P.J., Stelzer, E.H., Greber, U.F., Neuhauss, S.C., Gesemann, M. (2015) Proper migration and axon outgrowth of zebrafish cranial motoneuron subpopulations require the cell adhesion molecule MDGA2A. Biology Open. 4(2):146-54
Keller, P.J., Ahrens, M.B., Freeman, J. (2015) Light-sheet imaging for systems neuroscience. Nature Methods. 12:27-9
Crespo, C.L., Vernieri, C., Keller, P.J., Garrè, M., Bender, J.R., Wittbrodt, J., Pardi, R. (2014) The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes. Journal of Cell Science. 127:4381-95
Vladimirov, N., Mu, Y., Kawashima, T., Bennett, D.V., Yang, C.T., Looger, L.L., Keller, P.J., Freeman, J., Ahrens, M.B. (2014) Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11(9):883-4
Amat, F., Lemon, W., Mossing, D.P., McDole, K., Wan, Y., Branson, K., Myers, E.W., Keller, P.J. (2014) Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nature Methods. 11(9):951-8
Keller, P.J. (2013) In vivo imaging of zebrafish embryogenesis. Methods (San Diego, Calif.). 62(3):268-78
Keller, P.J. (2013) Imaging morphogenesis: technological advances and biological insights. Science (New York, N.Y.). 340(6137):1234168
Amat, F., and Keller, P.J. (2013) Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy. Development, growth & differentiation. 55(4):563-578
Ahrens, M.B., Orger, M.B., Robson, D.N., Li, J.M., and Keller, P.J. (2013) Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nature Methods. 10(5):413-20
Amat, F., Myers, E.W., and Keller, P.J. (2013) Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinformatics (Oxford, England). 29(3):373-380
Keller, P.J., Schmidt, A.D., Santella, A., Khairy, K., Bao, Z., Wittbrodt, J., and Stelzer, E.H. (2010) Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nature Methods. 7(8):637-642

NON-ZEBRAFISH PUBLICATIONS