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Research
General Information
ZIRC
ZFIN ID: ZDB-PERS-130116-3
Ahrens, Misha
Email: ahrensm@janelia.hhmi.org
URL:
Affiliation: Ahrens Lab
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Country: United States
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BIOGRAPHY AND RESEARCH INTERESTS


PUBLICATIONS
Ahrens, M.B. (2019) Zebrafish Neuroscience: Using Artificial Neural Networks to Help Understand Brains. Current biology : CB. 29:R1138-R1140
Abdelfattah, A.S., Kawashima, T., Singh, A., Novak, O., Liu, H., Shuai, Y., Huang, Y.C., Campagnola, L., Seeman, S.C., Yu, J., Zheng, J., Grimm, J.B., Patel, R., Friedrich, J., Mensh, B.D., Paninski, L., Macklin, J.J., Murphy, G.J., Podgorski, K., Lin, B.J., Chen, T.W., Turner, G.C., Liu, Z., Koyama, M., Svoboda, K., Ahrens, M.B., Lavis, L.D., Schreiter, E.R. (2019) Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.). 365(6454):699-704
Marvin, J.S., Shimoda, Y., Magloire, V., Leite, M., Kawashima, T., Jensen, T.P., Kolb, I., Knott, E.L., Novak, O., Podgorski, K., Leidenheimer, N.J., Rusakov, D.A., Ahrens, M.B., Kullmann, D.M., Looger, L.L. (2019) A genetically encoded fluorescent sensor for in vivo imaging of GABA. Nature Methods. 16(8):763-770
Mu, Y., Bennett, D.V., Rubinov, M., Narayan, S., Yang, C.T., Tanimoto, M., Mensh, B.D., Looger, L.L., Ahrens, M.B. (2019) Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell. 178(1):27-43.e19
Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J., Ahrens, M.B. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15:1117-1125
Chen, X., Mu, Y., Hu, Y., Kuan, A.T., Nikitchenko, M., Randlett, O., Chen, A.B., Gavornik, J.P., Sompolinsky, H., Engert, F., Ahrens, M.B. (2018) Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. Neuron. 100:876-890.e5
Piatkevich, K.D., Jung, E.E., Straub, C., Linghu, C., Park, D., Suk, H.J., Hochbaum, D.R., Goodwin, D., Pnevmatikakis, E., Pak, N., Kawashima, T., Yang, C.T., Rhoades, J.L., Shemesh, O., Asano, S., Yoon, Y.G., Freifeld, L., Saulnier, J.L., Riegler, C., Engert, F., Hughes, T., Drobizhev, M., Szabo, B., Ahrens, M.B., Flavell, S.W., Sabatini, B.L., Boyden, E.S. (2018) A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. 14(4):352-360
Vanwalleghem, G.C., Ahrens, M.B., Scott, E.K. (2018) Integrative whole-brain neuroscience in larval zebrafish. Current opinion in neurobiology. 50:136-145
Friedrich, J., Yang, W., Soudry, D., Mu, Y., Ahrens, M.B., Yuste, R., Peterka, D.S., Paninski, L. (2017) Multi-scale approaches for high-speed imaging and analysis of large neural populations. PLoS Computational Biology. 13:e1005685
Kawashima, T., Zwart, M.F., Yang, C.T., Mensh, B.D., Ahrens, M.B. (2016) The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning. Cell. 167:933-946.e20
Dana, H., Mohar, B., Sun, Y., Narayan, S., Gordus, A., Hasseman, J.P., Tsegaye, G., Holt, G.T., Hu, A., Walpita, D., Patel, R., Macklin, J.J., Bargmann, C.I., Ahrens, M.B., Schreiter, E.R., Jayaraman, V., Looger, L.L., Svoboda, K., Kim, D.S. (2016) Sensitive red protein calcium indicators for imaging neural activity. eLIFE. 5
Dunn, T.W., Mu, Y., Narayan, S., Randlett, O., Naumann, E.A., Yang, C.T., Schier, A.F., Freeman, J., Engert, F., Ahrens, M.B. (2016) Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. eLIFE. 5:e12741
Quirin, S., Vladimirov, N., Yang, C.T., Peterka, D.S., Yuste, R., Ahrens, M. B. (2016) Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy. Optics letters. 41:855-858
Dunn, T.W., Gebhardt, C., Naumann, E.A., Riegler, C., Ahrens, M.B., Engert, F., Del Bene, F. (2016) Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish. Neuron. 89(3):613-28
Bennett, D.V., Ahrens, M.B. (2016) A Practical Guide to Light Sheet Microscopy. Methods in molecular biology (Clifton, N.J.). 1451:321-31
Fosque, B.F., Sun, Y., Dana, H., Yang, C.T., Ohyama, T., Tadross, M.R., Patel, R., Zlatic, M., Kim, D.S., Ahrens, M.B., Jayaraman, V., Looger, L.L., Schreiter, E.R. (2015) Labeling of active neural circuits in vivo with designed calcium integrators. Science (New York, N.Y.). 347:755-760
Keller, P.J., Ahrens, M.B., Freeman, J. (2015) Light-sheet imaging for systems neuroscience. Nature Methods. 12:27-9
Vladimirov, N., Mu, Y., Kawashima, T., Bennett, D.V., Yang, C.T., Looger, L.L., Keller, P.J., Freeman, J., Ahrens, M.B. (2014) Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11(9):883-4
Freeman, J., Vladimirov, N., Kawashima, T., Mu, Y., Sofroniew, N.J., Bennett, D.V., Rosen, J., Yang, C.T., Looger, L.L., Ahrens, M.B. (2014) Mapping brain activity at scale with cluster computing. Nature Methods. 11(9):941-50
Huang, K.H., Ahrens, M.B., Dunn, T.W., and Engert, F. (2013) Spinal Projection Neurons Control Turning Behaviors in Zebrafish. Current biology : CB. 23(16):1566-73
Ahrens, M.B., Huang, K.H., Narayan, S., Mensh, B.D., and Engert, F. (2013) Two-photon calcium imaging during fictive navigation in virtual environments. Frontiers in neural circuits. 7:104
Ahrens, M.B., Orger, M.B., Robson, D.N., Li, J.M., and Keller, P.J. (2013) Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nature Methods. 10(5):413-20
Kokel, D., Dunn, T.W., Ahrens, M.B., Alshut, R., Cheung, C.Y., Saint-Amant, L., Bruni, G., Mateus, R., van Ham, T.J., Shiraki, T., Fukada, Y., Kojima, D., Yeh, J.R., Mikut, R., von Lintig, J., Engert, F., and Peterson, R.T. (2013) Identification of Nonvisual Photomotor Response Cells in the Vertebrate Hindbrain. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(9):3834-3843

NON-ZEBRAFISH PUBLICATIONS