ZFIN Person: Bogdanovic, Ozren

ZFIN ID: ZDB-PERS-110304-7

Bogdanovic, Ozren

Email:	o.bogdanovic@garvan.org.au
URL:	http://www.bogdanoviclab.org/
Affiliation:	Bogdanovic Lab
Address:	Garvan Institute of Medical Research Genomics and Epigenetics Division 384 Victoria Street Darlinghurst 2010 Sydney Australia
Country:	Australia
Phone:	+61 (0) 2 9295 8340
Fax:	+61 (0) 2 9295 8101
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Ross, S.E., Vázquez-Marín, J., Gert, K.R.B., González-Rajal, Á., Dinger, M.E., Pauli, A., Martínez-Morales, J.R., Bogdanovic, O. (2023) Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species. Nucleic acids research. 51(18):9658-9671

Marlétaz, F., de la Calle-Mustienes, E., Acemel, R.D., Paliou, C., Naranjo, S., Martínez-García, P.M., Cases, I., Sleight, V.A., Hirschberger, C., Marcet-Houben, M., Navon, D., Andrescavage, A., Skvortsova, K., Duckett, P.E., González-Rajal, Á., Bogdanovic, O., Gibcus, J.H., Yang, L., Gallardo-Fuentes, L., Sospedra, I., Lopez-Rios, J., Darbellay, F., Visel, A., Dekker, J., Shubin, N., Gabaldón, T., Nakamura, T., Tena, J.J., Lupiáñez, D.G., Rokhsar, D.S., Gómez-Skarmeta, J.L. (2023) The little skate genome and the evolutionary emergence of wing-like fins. Nature. 616(7957):495-503

Baranasic, D., Hörtenhuber, M., Balwierz, P.J., Zehnder, T., Mukarram, A.K., Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D'Orazio, F.M., Relic, D., Pachkov, M., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S.E., Eagle, A., Martin, R., Obasaju, O., Rastegar, S., McGarvey, A.C., Kopp, W., Chambers, E., Wang, D., Kim, H.R., Acemel, R.D., Naranjo, S., Łapiński, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S.A., Burgess, S.M., Winata, C., van Eeden, F., Vaquerizas, J.M., Gómez-Skarmeta, J.L., Onichtchouk, D., Brown, B.J., Bogdanovic, O., van Nimwegen, E., Westerfield, M., Wardle, F.C., Daub, C.O., Lenhard, B., Müller, F. (2022) Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics. 54(7):1037-1050

Buono, L., Corbacho, J., Naranjo, S., Almuedo-Castillo, M., Moreno-Marmol, T., de la Cerda, B., Sanbria-Reinoso, E., Polvillo, R., Díaz-Corrales, F.J., Bogdanovic, O., Bovolenta, P., Martínez-Morales, J.R. (2021) Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish. Nature communications. 12:3866

Ross, S.E., Hesselson, D., Bogdanovic, O. (2021) Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain. Frontiers in cell and developmental biology. 9:643603

Ross, S.E., Bogdanovic, O. (2021) Generation and Molecular Characterization of Transient tet1/2/3 Zebrafish Knockouts. Methods in molecular biology (Clifton, N.J.). 2272:281-317

Geng, F.S., de la Calle-Mustienes, E., Gómez-Skarmeta, J.L., Lister, R., Bogdanovic, O. (2020) Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos. microPublication. Biology. 2020:

Ross, S.E., Angeloni, A., Geng, F.S., de Mendoza, A., Bogdanovic, O. (2020) Developmental remodelling of non-CG methylation at satellite DNA repeats. Nucleic acids research. 48(22):12675-12688

Cultrone, D., Zammit, N.W., Self, E., Postert, B., Han, J.Z.R., Bailey, J., Warren, J., Croucher, D.R., Kikuchi, K., Bogdanovic, O., Chtanova, T., Hesselson, D., Grey, S.T. (2020) A zebrafish functional genomics model to investigate the role of human A20 variants in vivo. Scientific Reports. 10:19085

Skvortsova, K., Tarbashevich, K., Stehling, M., Lister, R., Irimia, M., Raz, E., Bogdanovic, O. (2019) Retention of paternal DNA methylome in the developing zebrafish germline. Nature communications. 10:3054

Marlétaz, F., Firbas, P.N., Maeso, I., Tena, J.J., Bogdanovic, O., Perry, M., Wyatt, C.D.R., de la Calle-Mustienes, E., Bertrand, S., Burguera, D., Acemel, R.D., van Heeringen, S.J., Naranjo, S., Herrera-Ubeda, C., Skvortsova, K., Jimenez-Gancedo, S., Aldea, D., Marquez, Y., Buono, L., Kozmikova, I., Permanyer, J., Louis, A., Albuixech-Crespo, B., Le Petillon, Y., Leon, A., Subirana, L., Balwierz, P.J., Duckett, P.E., Farahani, E., Aury, J.M., Mangenot, S., Wincker, P., Albalat, R., Benito-Gutiérrez, È., Cañestro, C., Castro, F., D'Aniello, S., Ferrier, D.E.K., Huang, S., Laudet, V., Marais, G.A.B., Pontarotti, P., Schubert, M., Seitz, H., Somorjai, I., Takahashi, T., Mirabeau, O., Xu, A., Yu, J.K., Carninci, P., Martinez-Morales, J.R., Crollius, H.R., Kozmik, Z., Weirauch, M.T., Garcia-Fernàndez, J., Lister, R., Lenhard, B., Holland, P.W.H., Escriva, H., Gómez-Skarmeta, J.L., Irimia, M. (2018) Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. 564:64-70

Bogdanovic, O., and Gómez-Skarmeta, J.L. (2014) Embryonic DNA methylation: insights from the genomics era. Briefings in Functional Genomics. 13(2):121-30

Irimia, M., Tena, J.J., Alexis, M., Fernandez-Miñan, A., Maeso, I., Bogdanovic, O., de la Calle-Mustienes, E., Roy, S.W., Gómez-Skarmeta, J.L., and Fraser, H.B. (2012) Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Genome research. 22(12):2356-2367

Bogdanovic, O., Fernandez-Minan, A., Tena, J.J., de Lacalle-Mustienes, E., Hidalgo, C., van Kruysbergen, I., van Heeringen, S.J., Veenstra, G.J., and Gomez-Skarmeta, J.L. (2012) Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. Genome research. 22(10):2043-2053

NON-ZEBRAFISH PUBLICATIONS