ZFIN ID: ZDB-PERS-100428-1
Martin, Ryan
Email: ryanm@zfin.org
URL:
Affiliation: ZFIN Database Team
Address: Zebrafish Information Network 5291 University of Oregon Eugene, OR 97403-5291
Country: United States
Phone:
Fax:
ORCID ID:


BIOGRAPHY AND RESEARCH INTERESTS


PUBLICATIONS
Bradford, Y.M., Van Slyke, C.E., Howe, D.G., Fashena, D., Frazer, K., Martin, R., Paddock, H., Pich, C., Ramachandran, S., Ruzicka, L., Singer, A., Taylor, R., Tseng, W.C., Westerfield, M. (2023) From Multi-Allele Fish to Non-Standard Environments, How ZFIN Assigns Phenotypes, Human Disease Models, and Gene Expression Annotations to Genes. Genetics. 224(1):
Alliance of Genome Resources Consortium (2022) Harmonizing model organism data in the Alliance of Genome Resources. Genetics. 220(4):
Bradford, Y.M., Van Slyke, C.E., Ruzicka, L., Singer, A., Eagle, A., Fashena, D., Howe, D.G., Frazer, K., Martin, R., Paddock, H., Pich, C., Ramachandran, S., Westerfield, M. (2022) Zebrafish Information Network, the knowledgebase for Danio rerio research. Genetics. 220(4):
Howe, D.G., Ramachandran, S., Bradford, Y.M., Fashena, D., Toro, S., Eagle, A., Frazer, K., Kalita, P., Mani, P., Martin, R., Moxon, S.T., Paddock, H., Pich, C., Ruzicka, L., Schaper, K., Shao, X., Singer, A., Van Slyke, C.E., Westerfield, M. (2020) The Zebrafish Information Network: major gene page and home page updates. Nucleic acids research. 49(D1):D1058-D1064
Ruzicka, L., Howe, D.G., Ramachandran, S., Toro, S., Van Slyke, C.E., Bradford, Y.M., Eagle, A., Fashena, D., Frazer, K., Kalita, P., Mani, P., Martin, R., Moxon, S.T., Paddock, H., Pich, C., Schaper, K., Shao, X., Singer, A., Westerfield, M. (2019) The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. Nucleic acids research. 47(D1):D867-D873
Bradford, Y.M., Toro, S., Ramachandran, S., Ruzicka, L., Howe, D.G., Eagle, A., Kalita, P., Martin, R., Taylor Moxon, S.A., Schaper, K., Westerfield, M. (2017) Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN. ILAR journal. 58:4-16
Howe, D.G., Bradford, Y.M., Eagle, A., Fashena, D., Frazer, K., Kalita, P., Mani, P., Martin, R., Moxon, S.T., Paddock, H., Pich, C., Ramachandran, S., Ruzicka, L., Schaper, K., Shao, X., Singer, A., Toro, S., Van Slyke, C., Westerfield, M. (2017) The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. Nucleic acids research. 45(D1):D758-D768
Howe, D.G., Bradford, Y.M., Eagle, A., Fashena, D., Frazer, K., Kalita, P., Mani, P., Martin, R., Moxon, S.T., Paddock, H., Pich, C., Ramachandran, S., Ruzicka, L., Schaper, K., Shao, X., Singer, A., Toro, S., Van Slyke, C., Westerfield, M. (2016) A scientist's guide for submitting data to ZFIN. Methods in cell biology. 135:451-81
Ruzicka, L., Bradford, Y.M., Frazer, K., Howe, D.G., Paddock, H., Ramachandran, S., Singer, A., Toro, S., Van Slyke, C.E., Eagle, A.E., Fashena, D., Kalita, P., Knight, J., Mani, P., Martin, R., Moxon, S.A., Pich, C., Schaper, K., Shao, X., Westerfield, M. (2015) ZFIN, the Zebrafish Model Organism Database: Updates and new directions. Genesis (New York, N.Y. : 2000). 53(8):498-509
Howe, D.G., Bradford, Y.M., Conlin, T., Eagle, A.E., Fashena, D., Frazer, K., Knight, J., Mani, P., Martin, R., Moxon, S.A., Paddock, H., Pich, C., Ramachandran, S., Ruef, B.J., Ruzicka, L., Schaper, K., Shao, X., Singer, A., Sprunger, B., Van Slyke, C.E., and Westerfield, M. (2013) ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. Nucleic acids research. 41(D1):D854-860
Bradford, Y., Conlin, T., Dunn, N., Fashena, D., Frazer, K., Howe, D.G., Knight, J., Mani, P., Martin, R., Moxon, S.A., Paddock, H., Pich, C., Ramachandran, S., Ruef, B.J., Ruzicka, L., Bauer Schaper, H., Schaper, K., Shao, X., Singer, A., Sprague, J., Sprunger, B., Van Slyke, C., and Westerfield, M. (2011) ZFIN: enhancements and updates to the zebrafish model organism database. Nucleic acids research. 39(suppl 1):D822-D829

NON-ZEBRAFISH PUBLICATIONS
Cagin, T., Wang, G., Martin, R., Zamanakos, G., Vaidehi, N., Mainz, D. T., & Goddard III, W. A. (2001). Multiscale modeling and simulation methods with applications to dendritic polymers. Computational and Theoretical polymer science, 11(5), 345-356.

Cagin, T., Wang, G., Martin, R., Breen, N., & Goddard III, W. A. (2000). Molecular modelling of dendrimers for nanoscale applications. Nanotechnology, 11(2), 77.

Cagin, T., Miklis, P. J., Wang, G., Zamanakos, G., Martin, R., Li, H., ... & Goddard, W. A. (1999, May). Recent advances in simulation of dendritic polymers. In Materials Research Society Symposium Proceedings (Vol. 543, pp. 299-310). Materials Research Society.

Hansen, D. L., Cotter, J., Fisher, G. R., Leung, K. T., Martin, R., Neill, P., ... & Lindle, D. W. (1999). Multi-ion coincidence measurements of methyl chloride following photofragmentation near the chlorine K-edge. Journal of Physics B: Atomic, Molecular and Optical Physics, 32(11), 2629.

Hansen, D. L., Arrasate, M. E., Cotter, J., Fisher, G. R., Hemmers, O., Leung, K. T., Martin, R., ... & Lindle, D. W. (1998). Photofragmentation of third-row hydrides following photoexcitation at deep-core levels. Physical review A, 58(5), 3757.

Hansen, D. L., Armen, G. B., Arrasate, M. E., Cotter, J., Fisher, G. R., Leung, K. T., Martin, R., ... & Lindle, D. W. (1998). Post-Collision-Interaction Effects in HCl Following Photofragmentation Near the Chlorine K Edge. Physical Review A, 57(6), R4090.

Hansen, D. L., Arrasate, M. E., Martin, R., Vanderford, B., Lindle, D. W., Armen, G. B., ... & Whitfield, S. B. (1998, May). Post-Collision-Interaction Effects in HCl at the Cl K-edge. In APS Division of Atomic, Molecular and Optical Physics Meeting Abstracts (Vol. 1).

Hansen, D. L., Arrasate, M. E., Cotter, J., Fisher, G. R., Leung, K. T., Levin, J. C., Martin, R., ... & Lindle, D. W. (1998). Neutral dissociation of hydrogen following photoexcitation of HCl at the chlorine K edge. Physical Review A, 57(4), 2608.

Hansen, D. L., Martin, R., & Vanderford, B. (1997). Dissociation of deep-core-excited CH_3Cl.

Banka, P. A., Selser, J. C., Wang, B., Shenoy, D. K., & Martin, R. (1996). Nonionic polymer-salt interactions in dilute solution: The poly (ethylene oxide)/LiClO4/methanol system. Macromolecules, 29(11), 3956-3959.