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Fig. S5

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ZDB-IMAGE-240206-12
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Figures for Zhao et al., 2023
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Fig. S5 Image processing procedures for cryo-EM of E. coli 70S ribosomes, related to Figure 6 Image processing of E. coli 70S ribosomes complexed with tRNAiMet at P-site Q-tRNAs at the A-site. (A–F) (A) Human tRNAAsp bearing G34 and the GAU codon at the A-site (PDB: 7Y7C , EMDB: EMD-33660), (B) human tRNAAsp bearing Q34 and the GAU codon at the A-site (PDB: 7Y7D, EMDB: EMD-33661), (C) human tRNAAsp bearing manQ34 and the GAU codon at the A-site (PDB: 7Y7E, EMDB: EMD-33662), (D) human tRNAAsp bearing manQ34 and the GAC codon at the A-site (PDB: 7Y7F, EMDB: EMD-33663), (E) human tRNATyr bearing galQ34 and the UAU codon at the A-site (PDB: 7Y7G, EMDB: EMD-33664), (F) human tRNATyr bearing galQ34 and the UAC codon at the A-site (PDB: 7Y7H, EMDB : EMD-33665). The subgroup others includes A-site vacant 70S and low-resolution particles. (G and H) Gold standard FSC curves (G) and refined model versus map FSC curves (H) of cryo-EM models. Black, tRNAAsp (manQ34) with the GAU codon (PDB: 7Y7E , EMDB: EMD-33662), blue, tRNAAsp (manQ34) with the GAC codon (PDB: 7Y7F, EMDB: EMD-33663), red, tRNATyr (galQ34) with the UAU codon (PDB: 7Y7G, EMDB: EMD-33664), green, tRNATyr (galQ34) with the UAC codon (PDB: 7Y7H, EMDB: EMD-33665), orange, tRNAAsp (G34) with the GAU codon (PDB: 7Y7C, EMDB: EMD-33660), purple, tRNAAsp (Q34) with the GAU codon (PDB: 7Y7D, EMDB : EMD-33661). (I) Color-coded local resolution distribution of cryo-EM map for each ribosome complex as indicated. Blue circles indicate the A-sites.

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Reprinted from Cell, 186(25), Zhao, X., Ma, D., Ishiguro, K., Saito, H., Akichika, S., Matsuzawa, I., Mito, M., Irie, T., Ishibashi, K., Wakabayashi, K., Sakaguchi, Y., Yokoyama, T., Mishima, Y., Shirouzu, M., Iwasaki, S., Suzuki, T., Suzuki, T., Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth, 5517-5535.e24, Copyright (2023) with permission from Elsevier. Full text @ Cell