Gene

lsm3

ID

ZDB-GENE-161207-2

Name

LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated

Symbol

lsm3 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to localize to spliceosomal complex.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lsm3 Human Ortholog

No data available

Associated With lsm3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001163	Sm domain, eukaryotic/archaea-type
Domain	IPR034105	Sm-like protein Lsm3
Domain	IPR047575	Sm domain
Family	IPR040002	U6 snRNA-associated Sm-like protein Lsm3
Homologous_superfamily	IPR010920	LSM domain superfamily

Domain Details Per Protein

Protein	Length	LSM domain superfamily	Sm domain	Sm domain, eukaryotic/archaea-type	Sm-like protein Lsm3	U6 snRNA-associated Sm-like protein Lsm3
UniProtKB:E7EZE6 InterPro

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	lsm3-201 (1) Ensembl	Ensembl		1,650 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations