Gene

arid4b

ID

ZDB-GENE-160607-1

Name

AT-rich interaction domain 4B

Symbol

arid4b Nomenclature History

Previous Names

tomm20a
zgc:73165

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Orthologous to human ARID4B (AT-rich interaction domain 4B).

Genome Resources

Note

Two genes, arid4b and tomm20a shared one gene record. On 2016-06-07, the sequences were separated and gene names updated.

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With arid4b Human Ortholog

No data available

Associated With arid4b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001606	ARID DNA-binding domain
Domain	IPR002999	Tudor domain
Domain	IPR012603	ARID4A/B, PWWP domain
Domain	IPR025995	RNA binding activity-knot of a chromodomain
Domain	IPR028853	ARID4B, ARID/BRIGHT domain
Family	IPR051232	AT-rich Interactive Domain/SWI1 Chromatin Remodeling
Homologous_superfamily	IPR016197	Chromo-like domain superfamily
Homologous_superfamily	IPR036431	ARID DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	ARID4A/B, PWWP domain	ARID4B, ARID/BRIGHT domain	ARID DNA-binding domain	ARID DNA-binding domain superfamily	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Chromo-like domain superfamily	RNA binding activity-knot of a chromodomain	Tudor domain
UniProtKB:A0A8M1RMF8 InterPro	1179
UniProtKB:A0A8M2BKB0 InterPro	1240
UniProtKB:F1R2N8 InterPro	1239

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tomm20a-201 (1) Ensembl	Ensembl	3,774 nt	Select Tool ZFIN BLAST
mRNA	tomm20a-202 (1) Ensembl	Ensembl	1,161 nt	Select Tool
mRNA	tomm20a-203 (1) Ensembl	Ensembl	3,591 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations