Gene
arid4b
- ID
- ZDB-GENE-160607-1
- Name
- AT-rich interaction domain 4B
- Symbol
- arid4b Nomenclature History
- Previous Names
-
- tomm20a
- zgc:73165
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human ARID4B (AT-rich interaction domain 4B).
- Genome Resources
- Note
-
Two genes, arid4b and tomm20a shared one gene record. On 2016-06-07, the sequences were separated and gene names updated.
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001606 | ARID DNA-binding domain |
| Domain | IPR002999 | Tudor domain |
| Domain | IPR012603 | ARID4A/B, PWWP domain |
| Domain | IPR025995 | RNA binding activity-knot of a chromodomain |
| Domain | IPR028853 | ARID4B, ARID/BRIGHT domain |
| Family | IPR051232 | AT-rich Interactive Domain/SWI1 Chromatin Remodeling |
| Homologous_superfamily | IPR016197 | Chromo-like domain superfamily |
| Homologous_superfamily | IPR036431 | ARID DNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | ARID4A/B, PWWP domain | ARID4B, ARID/BRIGHT domain | ARID DNA-binding domain | ARID DNA-binding domain superfamily | AT-rich Interactive Domain/SWI1 Chromatin Remodeling | Chromo-like domain superfamily | RNA binding activity-knot of a chromodomain | Tudor domain |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M1RMF8 | InterPro | 1179 | ||||||||
| UniProtKB:A0A8M2BKB0 | InterPro | 1240 | ||||||||
| UniProtKB:F1R2N8 | InterPro | 1239 | ||||||||
| UniProtKB:A0AB32T7F3 | InterPro | 1213 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
tomm20a-201
(1)
|
Ensembl | 3,774 nt | ||
| mRNA |
tomm20a-202
(1)
|
Ensembl | 1,161 nt | ||
| mRNA |
tomm20a-203
(1)
|
Ensembl | 3,591 nt |
Interactions and Pathways
No data available
Plasmids
No data available