ZFIN is now using GRCz12tu for Genomic Data
Gene
shoc1
- ID
- ZDB-GENE-141222-97
- Name
- shortage in chiasmata 1
- Symbol
- shoc1 Nomenclature History
- Previous Names
-
- si:ch73-194c23.1
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- No data available
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| spermatogenic failure 75 | Alliance | Spermatogenic failure 75 | 619949 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR039991 | Protein shortage in chiasmata 1 ortholog |
Domain Details Per Protein
| Protein | Additional Resources | Length | Protein shortage in chiasmata 1 ortholog |
|---|---|---|---|
| UniProtKB:A0A8M9QED4 | InterPro | 1450 | |
| UniProtKB:A0AB32TX39 | InterPro | 1451 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch73-194c23.1-201
(1)
|
Ensembl | 1,160 nt | ||
| mRNA |
si:ch73-194c23.1-202
(1)
|
Ensembl | 1,041 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers