Gene

mhc1lca

ID

ZDB-GENE-140820-4

Name

major histocompatibility complex class I LCA

Symbol

mhc1lca Nomenclature History

Previous Names

sb:eu2458
si:dkey-225f5.5

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

null

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2005

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

eu2458 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mhc1lca Human Ortholog

No data available

Associated With mhc1lca Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site
Domain	IPR003597	Immunoglobulin C1-set
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR011161	MHC class I-like antigen recognition-like
Family	IPR050208	Antigen-presenting and immune regulatory MHC class I-related
Homologous_superfamily	IPR011162	MHC classes I/II-like antigen recognition protein
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily
Homologous_superfamily	IPR037055	MHC class I-like antigen recognition-like superfamily

Domain Details Per Protein

Protein	Length	Antigen-presenting and immune regulatory MHC class I-related	Immunoglobulin C1-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin/major histocompatibility complex, conserved site	MHC classes I/II-like antigen recognition protein	MHC class I-like antigen recognition-like	MHC class I-like antigen recognition-like superfamily
UniProtKB:A0A8M9PDN6 InterPro	356
UniProtKB:A0A0R4IZK4 InterPro	350

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	si:dkey-225f5.5-201 (1) Ensembl	Ensembl		1,663 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations