Gene

cdh16

ID

ZDB-GENE-140106-140

Name

cadherin 16, KSP-cadherin

Symbol

cdh16 Nomenclature History

Previous Names

zmp:0000001180 (1)

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to localize to integral component of membrane and plasma membrane. Orthologous to human CDH16 (cadherin 16).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Klingbeil et al., 2021

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cdh16 Human Ortholog

No data available

Associated With cdh16 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020894	Cadherin conserved site
Domain	IPR002126	Cadherin-like
Family	IPR039808	Cadherin
Homologous_superfamily	IPR015919	Cadherin-like superfamily

Domain Details Per Protein

Protein	Length	Cadherin	Cadherin conserved site	Cadherin-like	Cadherin-like superfamily
UniProtKB:A0A8M9Q8V1 InterPro	199

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	cdh16-202 (1) Ensembl	Ensembl		5,564 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations