ZFIN is now using GRCz12tu for Genomic Data
Gene
pcdh12
- ID
- ZDB-GENE-140106-126
- Name
- protocadherin 12
- Symbol
- pcdh12 Nomenclature History
- Previous Names
-
- zmp:0000001166 (1)
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion. Predicted to be located in anchoring junction; extracellular region; and membrane. Predicted to be active in plasma membrane. Orthologous to human PCDH12 (protocadherin 12).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Diencephalic-mesencephalic junction dysplasia syndrome 1 | 251280 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin conserved site | Cadherin-like | Cadherin-like superfamily | Cadherin, N-terminal | Protocadherin/Cadherin-related Cell Adhesion |
|---|---|---|---|---|---|---|---|
| UniProtKB:E7F5T8 | InterPro | 1174 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pcdh12-201
(1)
|
Ensembl | 3,822 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance