ZFIN is now using GRCz12tu for Genomic Data

Gene

alox5b.1

ID

ZDB-GENE-131219-3

Name

arachidonate 5-lipoxygenase b, tandem duplicate 1

Symbol

alox5b.1 Nomenclature History

Previous Names

ALOX3a (1)
si:dkey-77f5.12

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable arachidonate 5-lipoxygenase activity. Predicted to be involved in arachidonate metabolic process; lipid oxidation; and lipoxygenase pathway. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma (multiple); pancreatic cancer; and pulmonary tuberculosis. Orthologous to human ALOX5 (arachidonate 5-lipoxygenase).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With alox5b.1 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
asthma	Alliance	{Asthma, diminished response to antileukotriene treatment in}	600807
		{Atherosclerosis, susceptibility to}

Associated With alox5b.1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR020833	Lipoxygenase, iron binding site
Conserved_site	IPR020834	Lipoxygenase, conserved site
Domain	IPR001024	PLAT/LH2 domain
Domain	IPR013819	Lipoxygenase, C-terminal
Domain	IPR042062	Lipoxygenase, vertebrates, PLAT domain
Family	IPR000907	Lipoxygenase
Family	IPR001885	Lipoxygenase, mammalian
Homologous_superfamily	IPR036226	Lipoxigenase, C-terminal domain superfamily
Homologous_superfamily	IPR036392	PLAT/LH2 domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Lipoxigenase, C-terminal domain superfamily	Lipoxygenase	Lipoxygenase, conserved site	Lipoxygenase, C-terminal	Lipoxygenase, iron binding site	Lipoxygenase, mammalian	Lipoxygenase, vertebrates, PLAT domain	PLAT/LH2 domain	PLAT/LH2 domain superfamily
UniProtKB:A0A8M6YUZ0	InterPro	676

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	alox5b.1-201 (1) Ensembl	Ensembl	1,257 nt	Select Tool ZFIN BLAST
mRNA	alox5b.1-202 (1) Ensembl	Ensembl	2,278 nt	Select Tool ZFIN BLAST
mRNA	alox5b.1-203 (1) Ensembl	Ensembl	720 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations