ZFIN is now using GRCz12tu for Genomic Data
Gene
colec10
- ID
- ZDB-GENE-131127-525
- Name
- collectin sub-family member 10 (C-type lectin)
- Symbol
- colec10 Nomenclature History
- Previous Names
-
- si:ch211-93i7.4 (1)
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable carbohydrate binding activity. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in 3MC syndrome 3. Orthologous to human COLEC10 (collectin subfamily member 10).
- Genome Resources
- Note
-
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Abu Nahia et al., 2024
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| 3MC syndrome 3 | Alliance | 3MC syndrome 3 | 248340 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Calcium-dependent Lectin | Collagen triple helix repeat | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IRN4 | InterPro | 271 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
colec10-201
(1)
|
Ensembl | 1,376 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers