Gene

hs1bp3

ID
ZDB-GENE-131121-391
Name
HCLS1 binding protein 3
Symbol
hs1bp3 Nomenclature History
Previous Names
  • si:ch1073-80i24.2
Type
protein_coding_gene
Location
Chr: 17 Mapping Details/Browsers
Description
Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within negative regulation of autophagy. Orthologous to human HS1BP3 (HCLS1 binding protein 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-hs1bp3N/AHolland et al., 2016
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Human Disease
Associated With hs1bp3 Human Ortholog
No data available
Associated With hs1bp3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001683 Phox homology
Domain IPR037901 HCLS1-binding protein 3, PX domain
Family IPR039701 HCLS1-binding protein 3
Homologous_superfamily IPR036871 PX domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length HCLS1-binding protein 3 HCLS1-binding protein 3, PX domain Phox homology PX domain superfamily
UniProtKB:F6PCK0 InterPro 349
UniProtKB:Q6DHB3 InterPro 365
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 17
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA hs1bp3-201 (1)
Ensembl
Ensembl 1,589 nt
ZFIN BLAST
ncRNA hs1bp3-002 (1)
Ensembl
Ensembl 687 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inFosmidCH1073-80I24ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001256221 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:CU499333 (1)34751 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:Q6DHB3 (1)365 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanHS1BP32
Amino acid sequence comparison (2)
MouseHs1bp312
Amino acid sequence comparison (1)
Citations
TSV
1 - 2 of 2
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