Gene

sgip1b

ID

ZDB-GENE-131121-110

Name

SH3GL interacting endocytic adaptor 1b

Symbol

sgip1b Nomenclature History

Previous Names

si:dkey-24m12.3 (1)

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to be located in clathrin-coated pit. Orthologous to human SGIP1 (SH3GL interacting endocytic adaptor 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa31264	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa39788	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
uab411	Allele with multiple variants	Unknown	Unknown	CRISPR	Zebrafish International Resource Center (ZIRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With sgip1b Human Ortholog

No data available

Associated With sgip1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR018808	Muniscin, C-terminal
Domain	IPR028565	Mu homology domain

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M6Z197	InterPro	871
UniProtKB:A0A8M6YVC9	InterPro	867
UniProtKB:A0A8M3AZW6	InterPro	854
UniProtKB:A0A8M9PHM6	InterPro	607

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Genome Build: GRCz11Chromosome: 2

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sgip1b-201 (1) Ensembl	Ensembl	2,030 nt	Select Tool ZFIN BLAST
mRNA	sgip1b-202 (1) Ensembl	Ensembl	4,543 nt	Select Tool ZFIN BLAST
mRNA	sgip1b-203 (1) Ensembl	Ensembl	2,740 nt	Select Tool ZFIN BLAST
mRNA	sgip1b-204 (1) Ensembl	Ensembl	2,692 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-24M12	BX510915	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_009298216 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:BX510915 (1)	253718 nt	Select Tool MegaBLAST
Polypeptide	UniProtKB:A0A8M6Z197 (1)	871 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	SGIP1	1	Ensembl:ENSG00000118473 Gene:84251 HGNC:25412 OMIM:611540	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)
Mouse	Sgip1	4	Ensembl:ENSMUSG00000028524 Gene:73094 MGI:1920344	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)

Citations

Include unpublished citations

No data available