ZFIN is now using GRCz12tu for Genomic Data
Gene
arid5b
- ID
- ZDB-GENE-121214-272
- Name
- AT-rich interaction domain 5B
- Symbol
- arid5b Nomenclature History
- Previous Names
-
- si:dkey-247f17.3
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | ARID DNA-binding domain | ARID DNA-binding domain superfamily | AT-rich interactive domain-containing protein 5B, ARID/BRIGHT DNA binding domain | AT-rich Interactive Domain/SWI1 Chromatin Remodeling |
|---|---|---|---|---|---|---|
| UniProtKB:E7F888 | InterPro | 1044 | ||||
| UniProtKB:A0A8M6Z9G4 | InterPro | 1079 | ||||
| UniProtKB:A0AC58GX94 | InterPro | 1156 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
arid5b-201
(1)
|
Ensembl | 3,153 nt | ||
| mRNA |
arid5b-202
(1)
|
Ensembl | 3,607 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers