Gene

si:ch211-286b5.4

ID

ZDB-GENE-121214-140

Name

si:ch211-286b5.4

Symbol

si:ch211-286b5.4 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to be involved in intraciliary transport involved in cilium assembly. Predicted to be active in centriolar satellite and ciliary basal body.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa4872	Allele with one point mutation	Unknown	Premature Stop	ENU
sa10423	Allele with one point mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa16918	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa19617	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa30808	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa31240	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa39711	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa39712	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
zko1124a	Allele with one insertion	Unknown	Unknown	CRISPR	China Zebrafish Resource Center (CZRC) (order this)

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Sequence Targeting Reagents

Targeting Reagent	Created Alleles	Citations
CRISPR1-si:ch211-286b5.4	zko1124a	(2)
CRISPR2-si:ch211-286b5.4	zko1124a	(2)

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Human Disease

Associated With si:ch211-286b5.4 Human Ortholog

No data available

Associated With si:ch211-286b5.4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR052300	Adhesion and Centrosome-associated Protein

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Domain Details Per Protein

Protein	Additional Resources	Length	Adhesion and Centrosome-associated Protein
UniProtKB:E7EYN2	InterPro	427

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Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Genome Build: GRCz11Chromosome: 1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	si:ch211-286b5.4-201 (1) Ensembl	Ensembl	947 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-286b5.4-203 (1) Ensembl	Ensembl	881 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-286b5.4-204 (1) Ensembl	Ensembl	1,485 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-286b5.4-205 (1) Ensembl	Ensembl	825 nt	Select Tool ZFIN BLAST
ncRNA	si:ch211-286b5.4-005 (1) Ensembl	Ensembl	529 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-286B5	BX284640	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_068221946 (1)	1421 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX284640 (1)	158537 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:E7EYN2 (1)	427 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance

No data available

Citations

Include unpublished citations

Sun, Y., Zhang, B., Luo, L., Shi, D.L., Wang, H., Cui, Z., Huang, H., Cao, Y., Shu, X., Zhang, W., Zhou, J., Li, Y., Du, J., Zhao, Q., Chen, J., Zhong, H., Zhong, T.P., Li, L., Xiong, J.W., Peng, J., Xiao, W., Zhang, J., Yao, J., Yin, Z., Mo, X., Peng, G., Zhu, J., Chen, Y., Zhou, Y., Liu, D., Pan, W., Zhang, Y., Ruan, H., Liu, F., Zhu, Z., Meng, A., ZAKOC Consortium (2019) Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9. Genome research. 30(1):118-26

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