Gene

chd3

ID
ZDB-GENE-121031-4
Name
chromodomain helicase DNA binding protein 3
Symbol
chd3 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 7 Mapping Details/Browsers
Description
Predicted to have ATP binding activity and metal ion binding activity. Involved in central nervous system development and developmental growth. Predicted to localize to nucleus. Is expressed in blastomere and central nervous system. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3).
Genome Resources
Note
None
Expression
All Expression Data
3 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
Fig. S7 from Fitzgerald et al., 2015
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With chd3 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Snijders Blok-Campeau syndrome 618205
Associated With chd3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Conserved_site IPR019786 Zinc finger, PHD-type, conserved site
Domain IPR000330 SNF2-related, N-terminal domain
Domain IPR000953 Chromo/chromo shadow domain
Domain IPR001650 Helicase, C-terminal
Domain IPR001965 Zinc finger, PHD-type
Domain IPR009462 Domain of unknown function DUF1086
Domain IPR009463 Domain of unknown function DUF1087
Domain IPR012957 CHD, C-terminal 2
Domain IPR012958 CHD, N-terminal
Domain IPR014001 Helicase superfamily 1/2, ATP-binding domain
Domain IPR019787 Zinc finger, PHD-finger
Domain IPR023780 Chromo domain
Homologous_superfamily IPR011011 Zinc finger, FYVE/PHD-type
Homologous_superfamily IPR013083 Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily IPR016197 Chromo-like domain superfamily
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily IPR036910 High mobility group box domain superfamily
Homologous_superfamily IPR038718 SNF2-like, N-terminal domain superfamily
Domain Details Per Protein
Protein Length CHD, C-terminal 2 CHD, N-terminal Chromo/chromo shadow domain Chromo domain Chromo-like domain superfamily DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Domain of unknown function DUF1086 Domain of unknown function DUF1087 Helicase, C-terminal Helicase superfamily 1/2, ATP-binding domain High mobility group box domain superfamily P-loop containing nucleoside triphosphate hydrolase SNF2-like, N-terminal domain superfamily SNF2-related, N-terminal domain Zinc finger, FYVE/PHD-type Zinc finger, PHD-finger Zinc finger, PHD-type Zinc finger, PHD-type, conserved site Zinc finger, RING/FYVE/PHD-type
UniProtKB:A0A2R8QAE3 1816
UniProtKB:A0PJQ7 430
UniProtKB:X1WBL0 1820
UniProtKB:A0A2R8Q004 330
UniProtKB:A0A2R8Q555 1701
UniProtKB:A0A2R8Q3B4 1820
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Ensembl Gene Tree
Citations