Gene

ushbp1

ID

ZDB-GENE-121024-2

Name

Usher syndrome 1C binding protein 1

Symbol

ushbp1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ushbp1 Human Ortholog

No data available

Associated With ushbp1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR019536	Harmonin-binding protein USHBP1, PDZ-binding domain
Family	IPR040171	Harmonin-binding protein USHBP1-like

Domain Details Per Protein

Protein	Length	Harmonin-binding protein USHBP1-like	Harmonin-binding protein USHBP1, PDZ-binding domain
UniProtKB:E7F1E7 InterPro	649

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ushbp1-201 (1) Ensembl	Ensembl	2,814 nt	Select Tool
mRNA	ushbp1-202 (1) Ensembl	Ensembl	303 nt	Select Tool
mRNA	ushbp1-204 (1) Ensembl	Ensembl	4,649 nt	Select Tool ZFIN BLAST
mRNA	ushbp1-205 (1) Ensembl	Ensembl	5,307 nt	Select Tool ZFIN BLAST
ncRNA	ushbp1-003 (1) Ensembl	Ensembl	249 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations