Gene

kdm3b

ID

ZDB-GENE-101007-4

Name

lysine (K)-specific demethylase 3B

Symbol

kdm3b Nomenclature History

Previous Names

im:7163548
jmjd1b (1)
wu:fa12c09
wu:fe01c10

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have chromatin DNA binding activity; histone demethylase activity (H3-K9 specific); and transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in histone H3-K9 demethylation and regulation of transcription, DNA-templated. Predicted to localize to chromatin and nucleus. Is expressed in female organism. Orthologous to human KDM3B (lysine demethylase 3B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7163548 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With kdm3b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Diets-Jongmans syndrome	618846

Associated With kdm3b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003347	JmjC domain
Domain	IPR054294	Domain of unknown function DUF7030
Family	IPR045109	Histone demethylase JHDM2-like

Domain Details Per Protein

Protein	Length	Domain of unknown function DUF7030	Histone demethylase JHDM2-like	JmjC domain
UniProtKB:A0A8M2BKG3 InterPro	1816
UniProtKB:A0A8M9PUA8 InterPro	673
UniProtKB:A0A8M2BKF8 InterPro	1776
UniProtKB:A0A8M9Q560 InterPro	672
UniProtKB:A0A0R4IDZ5 InterPro	1823
UniProtKB:A0A8M9Q1E0 InterPro	665
UniProtKB:A0A8M2BKX2 InterPro	1824
UniProtKB:A0A0R4ISI0 InterPro	1777

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	kdm3b-201 (1) Ensembl	Ensembl	6,362 nt	Select Tool
mRNA	kdm3b-202 (1) Ensembl	Ensembl	6,503 nt	Select Tool
mRNA	kdm3b-205 (1) Ensembl	Ensembl	7,555 nt	Select Tool ZFIN BLAST
mRNA	kdm3b-206 (1) Ensembl	Ensembl	7,531 nt	Select Tool ZFIN BLAST
mRNA	kdm3b-207 (1) Ensembl	Ensembl	7,486 nt	Select Tool ZFIN BLAST
ncRNA	kdm3b-002 (1) Ensembl	Ensembl	488 nt	Select Tool
ncRNA	kdm3b-004 (1) Ensembl	Ensembl	393 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations