Gene
otoa
- ID
- ZDB-GENE-100922-124
- Name
- otoancorin
- Symbol
- otoa Nomenclature History
- Previous Names
-
- si:dkey-71b5.7
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in cell surface. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 22. Orthologous to human OTOA (otoancorin).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| autosomal recessive nonsyndromic deafness 22 | Alliance | Deafness, autosomal recessive 22 | 607039 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Mesothelin | Stereocilin, LRR domain | Stereocilin-related |
|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z1A9 | InterPro | 656 | |||
| UniProtKB:E7EXK7 | InterPro | 1214 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:dkey-71b5.7-201
(1)
|
Ensembl | 5,266 nt | ||
| mRNA |
si:dkey-71b5.7-202
(1)
|
Ensembl | 3,674 nt | ||
| mRNA |
si:dkey-71b5.7-203
(1)
|
Ensembl | 3,930 nt | ||
| mRNA |
si:dkey-71b5.7-204
(1)
|
Ensembl | 4,200 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-34H11 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-71B5 | ZFIN Curated Data |
1 - 2 of 2
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_009292280 (1) | |||
| Genomic | GenBank:CR855277 (1) | 245559 nt | ||
| Polypeptide | UniProtKB:E7EXK7 (1) | 1214 aa |
- Sun, L., Yang, B., Peng, Z., Yang, T., Qin, B., Ao, J., Yang, Y., Wang, J., Zheng, L., Xie, H. (2023) Transcriptomics and Phenotypic Analysis of gpr56 Knockout in Zebrafish. International Journal of Molecular Sciences. 24(9):
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
1 - 2 of 2
Show