header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-100921-86
Gene Name: si:dkey-242e21.4
Gene Symbol: si:dkey-242e21.4
Sequence Ontology ID : SO:0001217

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in Kupffer's vesicle development and melanosome transport. Predicted to localize to the cytoplasm. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and cone-rod dystrophy  ...

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
All Expression Data: Fig. 3 from Heon et al., 2016
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa28720 Point Mutation Unknown Unknown ENU
Targeting reagents:
DISEASE ASSOCIATED WITH si:dkey-242e21.4 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
cone-rod dystrophy 16 Cone-rod dystrophy 16 614500
Retinitis pigmentosa 64 614500
Bardet-Biedl syndrome 21 617406
DISEASE ASSOCIATED WITH si:dkey-242e21.4 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process Kupffer's vesicle development (more)
Cellular Component cytoplasm (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR029239 (1)
  • Pfam:PF14996 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA si:dkey-242e21.4-001 (1) 517
    si:dkey-242e21.4-002 (1) 493
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:dkey-242e21.4 No data available
    MARKER RELATIONSHIPS
    si:dkey-242e21.4 Contained in: [BAC] DKEY-242E21 (1) (order this)
    si:dkey-242e21.4 Encodes: [EST] wz10863
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_003200236 (1)
    Genomic GenBank:BX072576 (1) 161771 bp
    Select Tool
    Polypeptide UniProtKB:P0DOC8 (1)
    Sequence Clusters UniGene:1949 (1)
    Sequence Information (all 10)
    OTHER si:dkey-242e21.4 GENE PAGES
  • Alliance (1)
  • Gene:100534958 (1)
  • VEGA:OTTDARG00000033552 (1)
  • ORTHOLOGY for si:dkey-242e21.4 ( Chr: 16 )
    CITATIONS (12)