ZFIN is now using GRCz12tu for Genomic Data
Gene
clstn3
- ID
- ZDB-GENE-100921-73
- Name
- calsyntenin 3
- Symbol
- clstn3 Nomenclature History
- Previous Names
-
- si:dkey-197a20.4
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables cell-cell adhesion mediator activity. Acts upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in cell surface and postsynaptic membrane. Is expressed in forebrain; hindbrain; midbrain; spinal cord; and telencephalon. Orthologous to human CLSTN3 (calsyntenin 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from Ortiz-Medina et al., 2015
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin-like | Cadherin-like superfamily | Calsyntenin, C-terminal | Concanavalin A-like lectin/glucanase domain superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PFP2 | InterPro | 956 | ||||
| UniProtKB:A0A9V2TXN1 | InterPro | 956 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
clstn3-201
(1)
|
Ensembl | 6,932 nt | ||
| mRNA |
clstn3-202
(1)
|
Ensembl | 840 nt | ||
| mRNA |
clstn3-203
(1)
|
Ensembl | 3,190 nt |
Interactions and Pathways
No data available
Plasmids
No data available