Gene

pamr1b

ID

ZDB-GENE-100422-12

Name

peptidase domain containing associated with muscle regeneration 1b

Symbol

pamr1b Nomenclature History

Previous Names

pamr1
si:dkey-234i14.19

Type

protein_coding_gene

Location

Chr: 25 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity and serine-type endopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human PAMR1 (peptidase domain containing associated with muscle regeneration 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Lissouba et al., 2018

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pamr1b Human Ortholog

No data available

Associated With pamr1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000436	Sushi/SCR/CCP domain
Domain	IPR000742	EGF-like domain
Domain	IPR000859	CUB domain
Domain	IPR001254	Serine proteases, trypsin domain
Domain	IPR001881	EGF-like calcium-binding domain
Family	IPR001314	Peptidase S1A, chymotrypsin family
Family	IPR051659	Serine Protease S1 Domain-Containing Protein
Homologous_superfamily	IPR009003	Peptidase S1, PA clan
Homologous_superfamily	IPR035914	Spermadhesin, CUB domain superfamily
Homologous_superfamily	IPR035976	Sushi/SCR/CCP superfamily
Homologous_superfamily	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold

Domain Details Per Protein

Protein	Length	CUB domain	EGF-like calcium-binding domain	EGF-like domain	Peptidase S1A, chymotrypsin family	Peptidase S1, PA clan	Peptidase S1, PA clan, chymotrypsin-like fold	Serine Protease S1 Domain-Containing Protein	Serine proteases, trypsin domain	Spermadhesin, CUB domain superfamily	Sushi/SCR/CCP domain	Sushi/SCR/CCP superfamily
UniProtKB:F1QE83 InterPro	1097

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	pamr1b-201 (1) Ensembl	Ensembl		3,294 nt	Select Tool ZFIN BLAST
mRNA	pamr1b-202 (1) Ensembl	Ensembl		4,751 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations