Gene
col27a1a
- ID
- ZDB-GENE-100119-1
- Name
- collagen, type XXVII, alpha 1a
- Symbol
- col27a1a Nomenclature History
- Previous Names
-
- cb221 (1)
- sb:cb221
- Type
- protein_coding_gene
- Location
- Unmapped
- Description
- Predicted to be an extracellular matrix structural constituent. Acts upstream of or within bone mineralization; notochord morphogenesis; and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in several structures, including hypochord; mesoderm; periderm; pronephric duct; and skeletal system. Orthologous to human COL27A1 (collagen type XXVII alpha 1 chain).
- Genome Resources
-
- Alliance (1)
- Gene:100004688 (1)
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 7 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb221 (11 images)
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Christiansen et al., 2009
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Steel syndrome | 615155 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000885 | Fibrillar collagen, C-terminal |
| Domain | IPR001791 | Laminin G domain |
| Domain | IPR048287 | Thrombospondin-like, N-terminal domain |
| Family | IPR050149 | Collagen superfamily |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Repeat | IPR008160 | Collagen triple helix repeat |
Domain Details Per Protein
| Protein | Length | Collagen superfamily | Collagen triple helix repeat | Concanavalin A-like lectin/glucanase domain superfamily | Fibrillar collagen, C-terminal | Laminin G domain | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|---|---|---|
|
UniProtKB:C7DZK3
|
1783 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Comparative Orthology
- Alliance