ZFIN is now using GRCz12tu for Genomic Data
Gene
rp1l1b
- ID
- ZDB-GENE-091204-67
- Name
- rp1 like 1b
- Symbol
- rp1l1b Nomenclature History
- Previous Names
-
- si:dkey-33i22.3
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in several processes, including axoneme assembly; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and cytoplasm. Predicted to be active in axoneme and photoreceptor connecting cilium. Is expressed in eye. Human ortholog(s) of this gene implicated in occult macular dystrophy and retinitis pigmentosa 88. Orthologous to human RP1L1 (RP1 like 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from Gao et al., 2022
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| occult macular dystrophy | Alliance | Occult macular dystrophy | 613587 |
| retinitis pigmentosa 88 | Alliance | Retinitis pigmentosa 88 | 618826 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Doublecortin domain | Doublecortin domain superfamily |
|---|---|---|---|---|
| UniProtKB:A0A8M9PT86 | InterPro | 3898 | ||
| UniProtKB:E7F542 | InterPro | 3919 | ||
| UniProtKB:A0A8M9PPV2 | InterPro | 3864 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rp1l1b-201
(1)
|
Ensembl | 12,281 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers