Gene
pgbd4
- ID
- ZDB-GENE-091204-417
- Name
- piggyBac transposable element derived 4
- Symbol
- pgbd4 Nomenclature History
- Previous Names
-
- si:ch73-353p21.4
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Description
- Orthologous to human PGBD4 (piggyBac transposable element derived 4).
- Genome Resources
- Note
-
No RNA sequence on Gene ID: 101886287
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa649 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR029526 | PiggyBac transposable element-derived protein |
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Domain Details Per Protein
| Protein | Additional Resources | Length | PiggyBac transposable element-derived protein |
|---|---|---|---|
| UniProtKB:E9QEM8 | InterPro | 626 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-353P21 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-222F2 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001431425 (1) | 2669 nt | ||
| Genomic | GenBank:BX005329 (1) | 186928 nt | ||
| Polypeptide | UniProtKB:E9QEM8 (2) | 626 aa |
- Comparative Orthology
- Alliance
- Madera, D., Alonso-Gómez, A., Delgado, M.J., Valenciano, A.I., Alonso-Gómez, Á.L. (2023) Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. International Journal of Molecular Sciences. 25(1):
- Tsai, H.Y., Hamilton, A., Tinch, A.E., Guy, D.R., Gharbi, K., Stear, M.J., Matika, O., Bishop, S.C., Houston, R.D. (2015) Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array. BMC Genomics. 16:969
- Micale, L., Loviglio, M.N., Manzoni, M., Fusco, C., Augello, B., Migliavacca, E., Cotugno, G., Monti, E., Borsani, G., Reymond, A., and Merla, G. (2012) A Fish-Specific Transposable Element Shapes the Repertoire of p53 Target Genes in Zebrafish. PLoS One. 7(10):e46642
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