ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-196i2.1
- ID
- ZDB-GENE-091204-150
- Name
- si:ch211-196i2.1
- Symbol
- si:ch211-196i2.1 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be active in basement membrane.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000885 | Fibrillar collagen, C-terminal |
| Domain | IPR001791 | Laminin G domain |
| Domain | IPR048287 | Thrombospondin-like, N-terminal domain |
| Family | IPR050149 | Collagen superfamily |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Repeat | IPR008160 | Collagen triple helix repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Collagen superfamily | Collagen triple helix repeat | Concanavalin A-like lectin/glucanase domain superfamily | Fibrillar collagen, C-terminal | Laminin G domain | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:X1WCX6 | InterPro | 1573 | ||||||
| UniProtKB:E7F5A1 | InterPro | 898 | ||||||
| UniProtKB:A0A8M3AWR9 | InterPro | 1813 | ||||||
| UniProtKB:A0A8M9PUH8 | InterPro | 1383 | ||||||
| UniProtKB:A0A8M9Q766 | InterPro | 1784 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-196i2.1-201
(1)
|
Ensembl | 6,041 nt |
Interactions and Pathways
No data available
Plasmids
No data available