Gene
trpc5b
- ID
- ZDB-GENE-091112-24
- Name
- transient receptor potential cation channel, subfamily C, member 5b
- Symbol
- trpc5b Nomenclature History
- Previous Names
-
- si:dkeyp-81e1.5
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Description
- Is expressed in brain; integument; and retinal inner nuclear layer. Orthologous to human TRPC5 (transient receptor potential cation channel subfamily C member 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa10159 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa13112 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa19266 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa23990 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa23991 | Allele with one point mutation | Unknown | Missense, Premature Stop | ENU | |
| sa23992 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa29635 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa43685 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa44972 | Allele with one point mutation | Unknown | Unknown | ENU |
1 - 9 of 9
Show
No data available
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
trpc5b-201
(1)
|
Ensembl | 1,748 nt | ||
| mRNA |
trpc5b-202
(1)
|
Ensembl | 3,596 nt |
1 - 2 of 2
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEYP-81E1 | ZFIN Curated Data |
1 - 1 of 1
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | GenBank:KF446634 (1) | 3144 nt | ||
| Genomic | GenBank:BX510996 | 197012 nt |
- Graham, D.M., Huang, L., Robinson, K.R., and Messerli, M.A. (2013) Epidermal keratinocyte polarity and motility require Ca2+ influx through TRPV1. Journal of Cell Science. 126(Pt 20):4602-13
- von Niederhäusern, V., Kastenhuber, E., Stäuble, A., Gesemann, M., and Neuhauss, S.C. (2013) Phylogeny and expression of canonical transient receptor potential (TRPC) genes in developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 242(12):1427-41
1 - 2 of 2
Show