Gene
igsf9bb
- ID
- ZDB-GENE-091112-15
- Name
- immunoglobulin superfamily, member 9Bb
- Symbol
- igsf9bb Nomenclature History
- Previous Names
-
- si:dkey-188m6.1
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Description
- Predicted to be located in plasma membrane. Predicted to be active in neuron projection. Orthologous to human IGSF9B (immunoglobulin superfamily member 9B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| la021905Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| la021906Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| sa32349 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa37310 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa37311 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa44968 | Allele with one point mutation | Unknown | Unknown | ENU |
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| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-igsf9bb | (2) | |
| CRISPR2-igsf9bb | (2) | |
| CRISPR3-igsf9bb | (2) | |
| CRISPR4-igsf9bb | (2) | |
| CRISPR5-igsf9bb | (2) | |
| CRISPR6-igsf9bb | (2) | |
| CRISPR7-igsf9bb | (2) | |
| CRISPR8-igsf9bb | (2) | |
| CRISPR9-igsf9bb | (2) |
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Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR003961 | Fibronectin type III |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Domain | IPR013106 | Immunoglobulin V-set domain |
| Family | IPR051170 | Neural and epithelial cell adhesion domain-containing protein |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036116 | Fibronectin type III superfamily |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Fibronectin type III | Fibronectin type III superfamily | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Immunoglobulin V-set domain | Neural and epithelial cell adhesion domain-containing protein |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3ATY5 | InterPro | 801 | ||||||||||
| UniProtKB:A0A8M3ATY0 | InterPro | 1439 | ||||||||||
| UniProtKB:A0A8N7TFP3 | InterPro | 1434 | ||||||||||
| UniProtKB:A0A8M6Z3Y3 | InterPro | 1340 | ||||||||||
| UniProtKB:A0A8M3AWX8 | InterPro | 830 | ||||||||||
| UniProtKB:A0A8M3B4S4 | InterPro | 1435 | ||||||||||
| UniProtKB:A0A8M3ALJ5 | InterPro | 1438 | ||||||||||
| UniProtKB:A0A8M3AM94 | InterPro | 853 | ||||||||||
| UniProtKB:A0AB32TAW7 | InterPro | 1448 | ||||||||||
| UniProtKB:A0AB32TBX5 | InterPro | 1444 | ||||||||||
| UniProtKB:A0AB32TC78 | InterPro | 1443 | ||||||||||
| UniProtKB:A0AB32TFR1 | InterPro | 1447 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
igsf9bb-201
(1)
|
Ensembl | 3,945 nt | ||
| mRNA |
igsf9bb-202
(1)
|
Ensembl | 4,215 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-8G12 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-188M6 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068216053 (1) | 10431 nt | ||
| Genomic | GenBank:BX470244 (1) | 200867 nt | ||
| Polypeptide | UniProtKB:A0AB32TAW7 (1) | 1448 aa |
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Moreno-Mateos, M.A., Vejnar, C.E., Beaudoin, J.D., Fernandez, J.P., Mis, E.K., Khokha, M.K., Giraldez, A.J. (2015) CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nature Methods. 12:982-8
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
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