header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-091111-3
Gene Name: autophagy related 9B
Gene Symbol: atg9b    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:158872

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 24 Mapping Details/Browsers
Description: Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to localize to the autophagosome and phagophore assembly site. Orthologous to human ATG9B (autophagy related 9B).
Genome Resources: Alliance (1),  Gene:791223 (1),  Ensembl(GRCz11):ENSDARG00000055292 (2)
GENE EXPRESSION
All Expression Data: Fig. 2 from He et al., 2009
Wild-type Stages, Structures: Segmentation:26+ somites (22.0h-24.0h) to Pharyngula:High-pec (42.0h-48.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH atg9b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH atg9b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process autophagy (more)
Cellular Component cytoplasmic vesicle (more)
GO Terms (all 13)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007241 (1)
  • Pfam:PF04109 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atg9b-201 (1)    Ensembl 1317
    atg9b-202 (1)    Ensembl 3585
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atg9b No data available
    MARKER RELATIONSHIPS
    atg9b Contained in: [BAC] DKEYP-87A6 (1)
    atg9b Encodes: [cDNA] MGC:158872 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001080705 (1) 1273 bp
    Genomic GenBank:CU019563 (1) 194521 bp
    Select Tool
    Polypeptide UniProtKB:E9QJ02 (1) 806 aa
    Sequence Clusters UniGene:94391 (1)
    Sequence Information (all 16)
    ORTHOLOGY for atg9b ( Chr: 24 )
    CITATIONS (19)