Gene

hmbox1b

ID

ZDB-GENE-090908-4

Name

homeobox containing 1 b

Symbol

hmbox1b Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Orthologous to human HMBOX1 (homeobox containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hmbox1b Human Ortholog

No data available

Associated With hmbox1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001356	Homeodomain
Domain	IPR001387	Cro/C1-type helix-turn-helix domain
Domain	IPR006899	Hepatocyte nuclear factor 1, N-terminal
Domain	IPR044866	HNF-1, dimerization domain
Domain	IPR044869	HNF-1, POU-specific (POUs) atypical domain
Family	IPR040363	Homeobox-containing protein 1
Homologous_superfamily	IPR009057	Homedomain-like superfamily
Homologous_superfamily	IPR010982	Lambda repressor-like, DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Cro/C1-type helix-turn-helix domain	Hepatocyte nuclear factor 1, N-terminal	HNF-1, dimerization domain	HNF-1, POU-specific (POUs) atypical domain	Homedomain-like superfamily	Homeobox-containing protein 1	Homeodomain	Lambda repressor-like, DNA-binding domain superfamily
UniProtKB:A0A8M2BL53 InterPro	462
UniProtKB:A0A8M3B2H2 InterPro	457
UniProtKB:A0A8M3AZL5 InterPro	456

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	hmbox1-201 (1) Ensembl	Ensembl		1,236 nt	Select Tool ZFIN BLAST
mRNA	hmbox1-202 (1) Ensembl	Ensembl		1,200 nt	Select Tool ZFIN BLAST
mRNA	hmbox1-203 (1) Ensembl	Ensembl		1,104 nt	Select Tool ZFIN BLAST
mRNA	hmbox1-204 (1) Ensembl	Ensembl		1,194 nt	Select Tool ZFIN BLAST
mRNA	hmbox1-205 (1) Ensembl	Ensembl		837 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations