Gene

rph3ab

ID

ZDB-GENE-090706-3

Name

rabphilin 3A homolog (mouse), b

Symbol

rph3ab Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have Rab GTPase binding activity and metal ion binding activity. Predicted to be involved in intracellular protein transport. Predicted to localize to membrane. Orthologous to human RPH3A (rabphilin 3A).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rph3ab Human Ortholog

No data available

Associated With rph3ab Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000008	C2 domain
Domain	IPR001565	Synaptotagmin
Domain	IPR010911	Rab-binding domain
Domain	IPR017455	Zinc finger, FYVE-related
Domain	IPR028698	Rabphilin-3A, FYVE domain
Domain	IPR041282	FYVE-type zinc finger
Domain	IPR047022	Rabphilin/Doc2, first C2 domain
Family	IPR043566	Rabphilin/Doc2/Noc2
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR035892	C2 domain superfamily

Domain Details Per Protein

Protein	Length	C2 domain	C2 domain superfamily	FYVE-type zinc finger	Rab-binding domain	Rabphilin-3A, FYVE domain	Rabphilin/Doc2, first C2 domain	Rabphilin/Doc2/Noc2	Synaptotagmin	Zinc finger, FYVE/PHD-type	Zinc finger, FYVE-related	Zinc finger, RING/FYVE/PHD-type
UniProtKB:A0A8M9QI83 InterPro	588
UniProtKB:A0A140LH42 InterPro	589

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rph3ab-201 (1) Ensembl	Ensembl	3,204 nt	Select Tool
mRNA	rph3ab-202 (1) Ensembl	Ensembl	1,695 nt	Select Tool ZFIN BLAST
mRNA	rph3ab-203 (1) Ensembl	Ensembl	1,695 nt	Select Tool ZFIN BLAST
mRNA	rph3ab-204 (1) Ensembl	Ensembl	1,734 nt	Select Tool ZFIN BLAST
mRNA	rph3ab-205 (1) Ensembl	Ensembl	1,611 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations