Gene

lsm10

ID
ZDB-GENE-090508-7
Name
LSM10, U7 small nuclear RNA associated
Symbol
lsm10 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Orthologous to human LSM10 (LSM10, U7 small nuclear RNA associated).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa9747Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa18537Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With lsm10 Human Ortholog
No data available
Associated With lsm10 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001163 Sm domain, eukaryotic/archaea-type
Domain IPR047575 Sm domain
Family IPR052840 U7 snRNA-associated Sm-like
Homologous_superfamily IPR010920 LSM domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length LSM domain superfamily Sm domain Sm domain, eukaryotic/archaea-type U7 snRNA-associated Sm-like
UniProtKB:A0A8M2BLE8 InterPro 120
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA oscp1a-201 (1)
Ensembl
Ensembl 399 nt
ZFIN BLAST
mRNA oscp1a-202 (1)
Ensembl
Ensembl 881 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-206D17ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001386623 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:CT030005 (1)126285 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8M2BLE8 (1)120 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanLSM101
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseLsm104
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
TSV
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