Gene

tarbp1

ID
ZDB-GENE-090313-346
Name
TAR (HIV-1) RNA binding protein 1
Symbol
tarbp1 Nomenclature History
Previous Names
  • si:dkey-85a20.2
  • si:dkey-85a20.4
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Description
Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within RNA processing and methylation. Orthologous to human TARBP1 (TAR (HIV-1) RNA binding protein 1).
Genome Resources
Note
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With tarbp1 Human Ortholog
No data available
Associated With tarbp1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001537 tRNA/rRNA methyltransferase, SpoU type
Domain IPR044748 Trm3/ TARBP1, C-terminal
Family IPR025806 Probable methyltransferase TARBP1
Family IPR045330 Probable methyltransferase Trm3/TARBP1
Homologous_superfamily IPR016024 Armadillo-type fold
Homologous_superfamily IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal
Homologous_superfamily IPR029028 Alpha/beta knot methyltransferases
Domain Details Per Protein
Protein Additional Resources Length Alpha/beta knot methyltransferases Armadillo-type fold Probable methyltransferase TARBP1 Probable methyltransferase Trm3/TARBP1 Trm3/ TARBP1, C-terminal tRNA (guanine-N1-)-methyltransferase, N-terminal tRNA/rRNA methyltransferase, SpoU type
UniProtKB:A0A8M6Z979 InterPro 1180
UniProtKB:A0A8M6Z1S9 InterPro 1578
UniProtKB:A0A8M1QV42 InterPro 1579
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:dkey-85a20.4-201 (1)
Ensembl
Ensembl 4,713 nt
ZFIN BLAST
mRNA si:dkey-85a20.4-202 (1)
Ensembl
Ensembl 1,187 nt
ZFIN BLAST
mRNA si:dkey-85a20.4-203 (1)
Ensembl
Ensembl 2,061 nt
ZFIN BLAST
mRNA si:dkey-85a20.4-204 (1)
Ensembl
Ensembl 894 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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