ZFIN is now using GRCz12tu for Genomic Data
Gene
tarbp1
- ID
- ZDB-GENE-090313-346
- Name
- TAR (HIV-1) RNA binding protein 1
- Symbol
- tarbp1 Nomenclature History
- Previous Names
-
- si:dkey-85a20.2
- si:dkey-85a20.4
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within RNA processing and methylation. Orthologous to human TARBP1 (tRNA guanosine 2 -O-methyltransferase TARBP1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001537 | tRNA/rRNA methyltransferase, SpoU type |
| Domain | IPR044748 | Trm3/ TARBP1, C-terminal |
| Domain | IPR056921 | TARBP1 domain |
| Homologous_superfamily | IPR016024 | Armadillo-type fold |
| Homologous_superfamily | IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal |
| Homologous_superfamily | IPR029028 | Alpha/beta knot methyltransferases |
Domain Details Per Protein
| Protein | Additional Resources | Length | Alpha/beta knot methyltransferases | Armadillo-type fold | TARBP1 domain | Trm3/ TARBP1, C-terminal | tRNA (guanine-N1-)-methyltransferase, N-terminal | tRNA/rRNA methyltransferase, SpoU type |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z979 | InterPro | 1180 | ||||||
| UniProtKB:A0A8M6Z1S9 | InterPro | 1578 | ||||||
| UniProtKB:A0A8M1QV42 | InterPro | 1579 | ||||||
| UniProtKB:A0AC58H2V8 | InterPro | 1570 | ||||||
| UniProtKB:A0AC58H2W5 | InterPro | 1578 | ||||||
| UniProtKB:A0AC58H2X0 | InterPro | 1571 | ||||||
| UniProtKB:A0AC58H2X1 | InterPro | 1579 | ||||||
| UniProtKB:A0AC58H2X5 | InterPro | 1180 | ||||||
| UniProtKB:A0AC58H2X6 | InterPro | 1179 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:dkey-85a20.4-201
(1)
|
Ensembl | 4,713 nt | ||
| mRNA |
si:dkey-85a20.4-202
(1)
|
Ensembl | 1,187 nt | ||
| mRNA |
si:dkey-85a20.4-203
(1)
|
Ensembl | 2,061 nt | ||
| mRNA |
si:dkey-85a20.4-204
(1)
|
Ensembl | 894 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers