Gene

spock2

ID

ZDB-GENE-090312-170

Name

SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

Symbol

spock2 Nomenclature History

Previous Names

im:7149140
si:dkeyp-115d2.5

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Predicted to be involved in anatomical structure development. Predicted to localize to extracellular space. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7149140 (12 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With spock2 Human Ortholog

No data available

Associated With spock2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000716	Thyroglobulin type-1
Domain	IPR002350	Kazal domain
Domain	IPR019577	SPARC/Testican, calcium-binding domain
Homologous_superfamily	IPR011992	EF-hand domain pair
Homologous_superfamily	IPR036058	Kazal domain superfamily
Homologous_superfamily	IPR036857	Thyroglobulin type-1 superfamily

Domain Details Per Protein

Protein	Length	EF-hand domain pair	Kazal domain	Kazal domain superfamily	SPARC/Testican, calcium-binding domain	Thyroglobulin type-1	Thyroglobulin type-1 superfamily
UniProtKB:A0A2R8Q8S3 InterPro	419
UniProtKB:A0A8M1RM78 InterPro	422

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	spock2-201 (1) Ensembl	Ensembl	1,338 nt	Select Tool ZFIN BLAST
mRNA	spock2-202 (1) Ensembl	Ensembl	1,704 nt	Select Tool ZFIN BLAST
mRNA	spock2-203 (1) Ensembl	Ensembl	276 nt	Select Tool ZFIN BLAST
mRNA	spock2-204 (1) Ensembl	Ensembl	2,282 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations