Gene
srbd1
- ID
- ZDB-GENE-081107-19
- Name
- S1 RNA binding domain 1
- Symbol
- srbd1 Nomenclature History
- Previous Names
-
- si:ch211-117n7.8
- si:ch211-219o4.1
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Orthologous to human SRBD1 (S1 RNA binding domain 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa28071 | Allele with one point mutation | Unknown | Splice Site | ENU |
1 - 1 of 1
Show
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | HHH domain 9 | Nucleic acid-binding, OB-fold | Ribonuclease H-like superfamily | RuvA domain 2-like | S1 domain | Small ribosomal subunit protein bS1-like | Tex-like, central region | Tex-like domain superfamily | Tex-like protein, HTH domain superfamily | Tex-like protein, N-terminal | Tex protein, YqgF-like domain | Tex, S1 domain | YqgF/RNase H-like domain | YqgF/RNase H-like domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9Q4Z5 | InterPro | 441 | ||||||||||||||
| UniProtKB:A0A8M9QFT1 | InterPro | 982 | ||||||||||||||
| UniProtKB:A0AB32TMZ8 | InterPro | 441 |
1 - 3 of 3
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-360H23 | ZFIN Curated Data | |
| Contained in | BAC | CH211-117N7 | ZFIN Curated Data | |
| Contained in | BAC | CH211-219O4 | ZFIN Curated Data |
1 - 3 of 3
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068213009 (1) | 3391 nt | ||
| Genomic | GenBank:BX248127 (1) | 173163 nt | ||
| Polypeptide | UniProtKB:A0A8M9QFT1 (1) | 982 aa |
- Ellingsen, S., Narawane, S., Fjose, A., Verri, T., Rønnestad, I. (2021) The zebrafish cationic amino acid transporter/glycoprotein-associated family: sequence and spatiotemporal distribution during development of the transport system b0,+ (slc3a1/slc7a9). Fish physiology and biochemistry. 47(5):1507-1525
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
1 - 2 of 2
Show