Gene
snrnp200
- ID
- ZDB-GENE-081105-64
- Name
- small nuclear ribonucleoprotein 200 (U5)
- Symbol
- snrnp200 Nomenclature History
- Previous Names
-
- fb63a09
- si:ch211-251j10.5
- wu:fb63a09
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosome conformational change to release U4 (or U4atac) and U1 (or U11). Predicted to localize to spliceosomal complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 33. Orthologous to human SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| retinitis pigmentosa 33 | Alliance | Retinitis pigmentosa 33 | 610359 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001650 | Helicase, C-terminal domain-like |
| Domain | IPR003593 | AAA+ ATPase domain |
| Domain | IPR004179 | Sec63 domain |
| Domain | IPR011545 | DEAD/DEAH box helicase domain |
| Domain | IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Domain | IPR041094 | Brr2, N-terminal helicase PWI domain |
| Domain | IPR048863 | Pre-mRNA-splicing helicase BRR2-like, plug domain |
| Homologous_superfamily | IPR014756 | Immunoglobulin E-set |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR035892 | C2 domain superfamily |
| Homologous_superfamily | IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Homologous_superfamily | IPR036390 | Winged helix DNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | AAA+ ATPase domain | Brr2, N-terminal helicase PWI domain | C2 domain superfamily | DEAD/DEAH box helicase domain | Helicase, C-terminal domain-like | Helicase superfamily 1/2, ATP-binding domain | Immunoglobulin E-set | P-loop containing nucleoside triphosphate hydrolase | Pre-mRNA-splicing helicase BRR2-like, plug domain | Sec63 domain | Winged helix DNA-binding domain superfamily | Winged helix-like DNA-binding domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:B0S754
|
2134 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
snrnp200-201
(1)
|
Ensembl | 7,669 nt | ||
| ncRNA |
snrnp200-002
(1)
|
Ensembl | 768 nt |
Interactions and Pathways
No data available
Plasmids
No data available